D. rerio Gene: prrx1a - ENSDARG00000033971 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033971
Nameprrx1a
Descriptionpaired related homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-020905-5]
OrganismDanio rerio (zebrafish)
Synonym(s)cb329, pmx1, prrx1, prrx1gn, prx1, wu:fa09h05, wu:fb52c01, zgc:64055

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
  • 3.90e3
94.59
  • 94.59
  • 86.94
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
3.63e3
  • 3.63e3
  • 3.83e3
  • 4.60e3
  • 4.83e3
  • 5.08e3
  • 6.36e3
  • 7.69e3
  • 7.83e3
  • 9.87e3
  • 1.04e4
87.84
  • 87.84
  • 87.17
  • 84.58
  • 83.83
  • 82.98
  • 78.70
  • 74.25
  • 73.79
  • 66.94
  • 65.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
  • 1.20e4
85.70
  • 85.70
  • 59.97
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.92
  • 82.92
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.21e3
  • 5.21e3
  • 5.34e3
  • 5.39e3
82.55
  • 82.55
  • 82.13
  • 81.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.26e3
  • 5.26e3
  • 9.73e3
82.39
  • 82.39
  • 67.41
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.44e3
  • 5.44e3
81.80
  • 81.80
AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.97e3
  • 5.97e3
  • 5.97e3
80.00
  • 80.00
  • 80.00
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
6.66e3
  • 6.66e3
  • 7.35e3
  • 7.46e3
  • 7.77e3
  • 9.12e3
  • 9.84e3
  • 1.05e4
  • 1.13e4
  • 1.39e4
  • 1.49e4
77.69
  • 77.69
  • 75.39
  • 75.03
  • 73.97
  • 69.45
  • 67.05
  • 64.87
  • 62.19
  • 53.59
  • 50.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 7.91e3
  • 8.79e3
  • 9.34e3
  • 1.27e4
  • 1.27e4
  • 1.28e4
76.46
  • 76.46
  • 73.52
  • 70.57
  • 68.74
  • 57.47
  • 57.47
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
74.32
  • 74.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.26
  • 74.26
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.86e3
  • 7.86e3
  • 7.86e3
  • 8.40e3
  • 8.40e3
73.67
  • 73.67
  • 73.67
  • 71.86
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.91e3
  • 7.91e3
73.50
  • 73.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.91
  • 70.91
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 8.79e3
  • 9.44e3
  • 9.44e3
  • 1.27e4
  • 1.27e4
  • 1.28e4
70.57
  • 70.57
  • 70.57
  • 68.40
  • 68.40
  • 57.47
  • 57.47
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 1.12e4
  • 1.12e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
68.74
  • 68.74
  • 62.49
  • 62.49
  • 53.31
  • 50.00
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.34e3
  • 9.34e3
  • 1.20e4
  • 1.20e4
  • 1.20e4
68.74
  • 68.74
  • 59.98
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
  • 1.25e4
  • 1.25e4
66.66
  • 66.66
  • 66.65
  • 62.49
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
  • 1.31e4
  • 1.33e4
64.28
  • 64.28
  • 56.24
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.35e4
63.43
  • 63.43
  • 54.76
AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.20e4
61.75
  • 61.75
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.21e4
  • 1.21e4
  • 1.34e4
  • 1.39e4
59.33
  • 59.33
  • 54.97
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.22e4
  • 1.22e4
  • 1.75e4
59.27
  • 59.27
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0006904head mesenchyme from mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
  • 1.24e4
  • 1.24e4
58.33
  • 58.33
  • 58.33
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.32e4
  • 1.32e4
  • 1.33e4
55.71
  • 55.71
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
  • 1.34e4
55.53
  • 55.53
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
53.98
  • 53.98
AEIR
  • AEIR
UBERON:0005729pectoral appendage field
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.21
  • 48.21
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.41
  • 45.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC053228, BC165100, BX548024
EnsemblENSDARG00000033971 (prrx1a)
Uniprot/SPTREMBLQ7T373, Q7T373_DANRE
ZFINZDB-GENE-020905-5 (prrx1a)

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