D. rerio Gene: SLC19A1 - ENSDARG00000033993 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033993
NameSLC19A1
Descriptionim:7144090 [Source:ZFIN;Acc:ZDB-GENE-050208-150]
OrganismDanio rerio (zebrafish)
Synonym(s)folt

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.23e3
  • 5.23e3
  • 6.63e3
  • 6.64e3
  • 9.22e3
82.50
  • 82.50
  • 77.80
  • 77.75
  • 69.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
78.14
  • 78.14
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
6.65e3
  • 6.65e3
  • 7.99e3
  • 8.03e3
  • 8.07e3
  • 9.16e3
  • 9.30e3
  • 9.43e3
  • 9.57e3
  • 1.03e4
  • 1.10e4
  • 1.11e4
  • 1.13e4
  • 1.47e4
77.73
  • 77.73
  • 73.25
  • 73.11
  • 72.97
  • 69.34
  • 68.88
  • 68.43
  • 67.97
  • 65.36
  • 63.04
  • 62.93
  • 62.18
  • 50.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.35e3
  • 7.35e3
75.41
  • 75.41
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
7.49e3
  • 7.49e3
  • 9.37e3
  • 9.95e3
  • 1.01e4
  • 1.02e4
  • 1.06e4
  • 1.06e4
  • 1.06e4
  • 1.09e4
  • 1.11e4
74.92
  • 74.92
  • 68.62
  • 66.68
  • 66.10
  • 65.91
  • 64.45
  • 64.39
  • 64.34
  • 63.58
  • 62.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.52e3
  • 7.52e3
74.81
  • 74.81
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
  • 8.51e3
73.58
  • 73.58
  • 71.52
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.21e3
  • 8.21e3
72.50
  • 72.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.23e3
  • 8.23e3
72.43
  • 72.43
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
8.35e3
  • 8.35e3
  • 8.93e3
  • 9.77e3
72.04
  • 72.04
  • 70.10
  • 67.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.48
  • 71.48
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.62e3
  • 8.62e3
71.15
  • 71.15
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
  • 1.11e4
70.39
  • 70.39
  • 62.82
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.97e3
  • 8.97e3
69.96
  • 69.96
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
  • 1.26e4
69.73
  • 69.73
  • 57.92
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.26e3
  • 9.26e3
  • 1.03e4
69.01
  • 69.01
  • 65.67
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.08e4
  • 1.08e4
  • 1.19e4
  • 1.25e4
  • 1.26e4
  • 1.46e4
  • 1.56e4
63.90
  • 63.90
  • 60.19
  • 58.27
  • 57.69
  • 51.08
  • 47.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.21
  • 63.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.88
  • 62.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.89
  • 57.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.62
  • 56.62
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.17
  • 56.17
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.77
  • 55.77
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.35e4
  • 1.35e4
  • 1.43e4
  • 1.44e4
54.90
  • 54.90
  • 52.11
  • 51.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.61
  • 53.61
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.65
  • 52.65
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.36
  • 42.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCABZ01008011, CABZ01008012, CABZ01008013
EnsemblENSDARG00000033993 (SLC19A1)
HGNCHGNC:10937 (SLC19A1)
Uniprot/SPTREMBLE7F2A7, E7F2A7_DANRE
ZFINZDB-GENE-050208-150 (im:7144090)

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