D. rerio Gene: dclk2a - ENSDARG00000034093 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034093
Namedclk2a
Descriptiondoublecortin-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-050420-170]
OrganismDanio rerio (zebrafish)
Synonym(s)cb572, dclk, dclk2, dclk2 {eco:0000313|embl:aai63926.1,gn eco:0000313|zfin:zdb-gene-050420-170}, sb:cb572, si:dkey-180n16.1, zdclk

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
  • 7.12e3
  • 7.80e3
  • 8.83e3
  • 8.96e3
  • 1.50e4
91.48
  • 91.48
  • 76.18
  • 73.90
  • 70.44
  • 69.98
  • 49.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
90.10
  • 90.10
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.32e3
  • 3.32e3
88.88
  • 88.88
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
  • 1.44e4
  • 1.49e4
  • 1.50e4
85.71
  • 85.71
  • 51.88
  • 50.20
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.60e3
  • 4.60e3
  • 4.60e3
  • 5.34e3
84.61
  • 84.61
  • 84.61
  • 82.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.72e3
  • 4.72e3
  • 4.98e3
  • 6.23e3
  • 7.86e3
  • 7.86e3
  • 9.13e3
  • 9.34e3
84.20
  • 84.20
  • 83.33
  • 79.15
  • 73.67
  • 73.67
  • 69.43
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
4.86e3
  • 4.86e3
  • 5.96e3
  • 7.33e3
  • 7.55e3
  • 8.83e3
83.73
  • 83.73
  • 80.06
  • 75.46
  • 74.73
  • 70.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.44
  • 83.44
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 4.98e3
  • 5.60e3
83.33
  • 83.33
  • 83.33
  • 81.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 5.23e3
  • 6.72e3
  • 6.94e3
  • 7.80e3
  • 8.22e3
  • 9.71e3
  • 1.02e4
83.32
  • 83.32
  • 82.49
  • 77.49
  • 76.77
  • 73.90
  • 72.48
  • 67.48
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
5.27e3
  • 5.27e3
  • 5.27e3
  • 5.27e3
  • 6.40e3
  • 7.47e3
  • 8.04e3
82.35
  • 82.35
  • 82.35
  • 82.35
  • 78.56
  • 74.99
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
5.34e3
  • 5.34e3
82.14
  • 82.14
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
5.75e3
  • 5.75e3
  • 5.75e3
  • 6.40e3
80.76
  • 80.76
  • 80.76
  • 78.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.79e3
  • 5.79e3
80.62
  • 80.62
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
5.81e3
  • 5.81e3
80.55
  • 80.55
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
5.85e3
  • 5.85e3
  • 5.98e3
  • 5.98e3
  • 6.72e3
80.42
  • 80.42
  • 79.99
  • 79.99
  • 77.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.98e3
  • 5.98e3
  • 6.54e3
79.99
  • 79.99
  • 78.12
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 5.98e3
  • 6.79e3
79.99
  • 79.99
  • 79.99
  • 77.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.98e3
  • 5.98e3
  • 5.98e3
  • 6.94e3
  • 9.44e3
  • 9.67e3
79.99
  • 79.99
  • 79.99
  • 76.77
  • 68.40
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.10e3
  • 6.10e3
  • 1.15e4
79.57
  • 79.57
  • 61.42
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.29e3
  • 6.29e3
  • 6.50e3
  • 6.85e3
  • 9.67e3
  • 9.96e3
78.94
  • 78.94
  • 78.25
  • 77.07
  • 67.63
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.64e3
  • 6.64e3
  • 7.03e3
77.77
  • 77.77
  • 76.46
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.11e3
  • 7.11e3
  • 7.93e3
76.21
  • 76.21
  • 73.46
AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
74.99
  • 74.99
  • 73.07
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
74.99
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.83e3
  • 9.83e3
67.10
  • 67.10
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.03e4
65.61
  • 65.61
  • 65.61
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.10e4
  • 1.10e4
  • 1.69e4
63.32
  • 63.32
  • 43.27
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.31
  • 62.31
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.14e4
  • 1.14e4
  • 1.20e4
61.88
  • 61.88
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.24e4
  • 1.24e4
  • 1.44e4
58.54
  • 58.54
  • 51.90
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.00
  • 53.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.52
  • 52.52
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.32
  • 49.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.25
  • 48.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.04
  • 46.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.76
  • 44.76
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.95
  • 43.95
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.39
  • 41.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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