D. rerio Gene: shisa2 - ENSDARG00000034138 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034138
Nameshisa2
Descriptionshisa family member 2 [Source:ZFIN;Acc:ZDB-GENE-030925-31]
OrganismDanio rerio (zebrafish)
Synonym(s)sb:cb803, sb:cb818, shisa, tmem46, wu:fa06h09, zgc:100929, zshisa

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
592
  • 592
  • 1.65e3
  • 3.26e3
  • 6.18e3
  • 6.25e3
98.02
  • 98.02
  • 94.49
  • 89.09
  • 79.33
  • 79.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
661
  • 661
  • 842
  • 1.04e3
  • 1.26e3
  • 1.69e3
  • 2.86e3
97.79
  • 97.79
  • 97.18
  • 96.52
  • 95.77
  • 94.34
  • 90.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.24e3
  • 1.24e3
  • 1.28e4
  • 1.31e4
  • 1.49e4
95.84
  • 95.84
  • 57.13
  • 56.23
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
1.99e3
  • 1.99e3
93.33
  • 93.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.18e3
  • 2.18e3
  • 2.33e3
  • 2.43e3
  • 2.68e3
  • 2.84e3
  • 4.63e3
  • 9.17e3
  • 9.45e3
  • 1.19e4
  • 1.28e4
  • 1.39e4
  • 1.43e4
  • 1.44e4
  • 1.56e4
92.71
  • 92.71
  • 92.19
  • 91.88
  • 91.02
  • 90.48
  • 84.50
  • 69.29
  • 68.37
  • 60.00
  • 57.01
  • 53.61
  • 52.21
  • 51.82
  • 47.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003089sclerotome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.99e3
91.67
  • 91.67
  • 91.67
  • 91.67
  • 90.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
2.49e3
  • 2.49e3
  • 8.45e3
  • 8.65e3
  • 8.72e3
91.67
  • 91.67
  • 71.72
  • 71.04
  • 70.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
3.15e3
  • 3.15e3
89.47
  • 89.47
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
3.15e3
  • 3.15e3
89.47
  • 89.47
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 5.34e3
  • 5.43e3
  • 5.43e3
  • 6.22e3
  • 8.30e3
  • 9.33e3
83.33
  • 83.33
  • 82.14
  • 81.81
  • 81.81
  • 79.16
  • 72.22
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 7.86e3
  • 7.91e3
  • 8.54e3
83.33
  • 83.33
  • 73.67
  • 73.52
  • 71.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
5.98e3
  • 5.98e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
79.99
  • 79.99
  • 78.56
  • 78.56
  • 78.56
  • 78.56
  • 78.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
6.18e3
  • 6.18e3
  • 6.72e3
  • 6.72e3
  • 7.47e3
  • 7.55e3
79.29
  • 79.29
  • 77.49
  • 77.49
  • 74.98
  • 74.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.26e3
  • 6.26e3
79.03
  • 79.03
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.54e3
  • 6.54e3
  • 7.11e3
  • 7.30e3
  • 7.95e3
  • 9.34e3
  • 9.64e3
  • 1.37e4
  • 1.58e4
  • 1.82e4
  • 2.28e4
78.10
  • 78.10
  • 76.20
  • 75.55
  • 73.39
  • 68.74
  • 67.73
  • 54.21
  • 47.14
  • 39.20
  • 23.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.64e3
  • 6.64e3
  • 7.03e3
  • 7.97e3
  • 7.97e3
77.77
  • 77.77
  • 76.46
  • 73.32
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.79e3
  • 6.79e3
  • 7.47e3
  • 7.47e3
77.27
  • 77.27
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
6.89e3
  • 6.89e3
  • 6.89e3
  • 6.89e3
  • 6.89e3
  • 6.89e3
  • 7.97e3
76.92
  • 76.92
  • 76.92
  • 76.92
  • 76.92
  • 76.92
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.12
  • 75.12
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.71e3
74.99
  • 74.99
  • 74.99
  • 72.72
  • 72.72
  • 72.72
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
74.99
  • 74.99
  • 73.07
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.80e3
  • 7.80e3
  • 8.22e3
  • 8.65e3
  • 8.83e3
  • 8.96e3
  • 9.25e3
  • 9.47e3
73.90
  • 73.90
  • 72.48
  • 71.04
  • 70.44
  • 69.98
  • 69.03
  • 68.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.91e3
  • 7.91e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
  • 8.79e3
  • 1.14e4
  • 1.21e4
73.52
  • 73.52
  • 72.48
  • 72.48
  • 71.41
  • 70.57
  • 61.75
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.97e3
  • 7.97e3
  • 1.05e4
  • 1.05e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
73.32
  • 73.32
  • 64.69
  • 64.69
  • 56.23
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
8.15e3
  • 8.15e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 9.96e3
72.72
  • 72.72
  • 69.99
  • 69.99
  • 69.99
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.22e3
  • 8.22e3
  • 8.30e3
  • 8.30e3
72.48
  • 72.48
  • 72.21
  • 72.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.96e3
72.21
  • 72.21
  • 72.21
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.65e3
  • 8.65e3
  • 8.65e3
  • 1.21e4
  • 1.21e4
71.04
  • 71.04
  • 71.04
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.72e3
  • 8.72e3
70.81
  • 70.81
AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 9.96e3
69.99
  • 69.99
  • 69.99
  • 69.99
  • 69.99
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
  • 9.60e3
  • 1.34e4
69.99
  • 69.99
  • 67.85
  • 55.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.97e3
  • 8.97e3
69.96
  • 69.96
AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.28
  • 65.28
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.22
  • 64.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.80
  • 61.80
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.15e4
  • 1.15e4
  • 1.22e4
61.34
  • 61.34
  • 59.06
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
  • 1.39e4
  • 1.42e4
60.84
  • 60.84
  • 53.57
  • 52.41
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.75
  • 56.75
AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
53.55
  • 53.55
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.63
  • 50.63
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
50.56
  • 50.56
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.17
  • 50.17
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.51e4
  • 1.51e4
  • 2.02e4
49.31
  • 49.31
  • 32.26
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.39
  • 48.39
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.60e4
  • 1.60e4
46.31
  • 46.31
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.88e4
  • 1.88e4
36.92
  • 36.92
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.31
  • 36.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.64
  • 23.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR812469
EnsemblENSDARG00000034138 (shisa2)
Uniprot/SPTREMBLA2CF00, A2CF00_DANRE
ZFINZDB-GENE-030925-31 (shisa2)

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