D. rerio Gene: lingo1a - ENSDARG00000034165 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034165
Namelingo1a
Descriptionleucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]
OrganismDanio rerio (zebrafish)
Synonym(s)sc:d0342
Orthologs(s)18 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.65e3
  • 1.65e3
94.49
  • 94.49
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
  • 6.79e3
  • 7.47e3
  • 8.75e3
81.25
  • 81.25
  • 77.27
  • 74.99
  • 70.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
5.97e3
  • 5.97e3
  • 5.97e3
  • 6.22e3
  • 6.64e3
  • 6.79e3
80.00
  • 80.00
  • 80.00
  • 79.16
  • 77.77
  • 77.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.15e3
  • 6.15e3
  • 6.54e3
  • 6.72e3
79.40
  • 79.40
  • 78.12
  • 77.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
6.29e3
  • 6.29e3
  • 6.29e3
  • 6.64e3
  • 7.47e3
  • 7.86e3
78.94
  • 78.94
  • 78.94
  • 77.77
  • 74.98
  • 73.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
6.40e3
  • 6.40e3
  • 6.72e3
  • 7.80e3
  • 8.01e3
  • 8.22e3
78.56
  • 78.56
  • 77.49
  • 73.90
  • 73.19
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.08e3
  • 7.08e3
  • 7.47e3
76.30
  • 76.30
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
  • 8.40e3
  • 8.79e3
74.99
  • 74.99
  • 73.52
  • 73.52
  • 71.86
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.15e3
  • 8.40e3
  • 8.40e3
74.99
  • 74.99
  • 74.99
  • 72.71
  • 71.86
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.01e3
  • 8.15e3
  • 8.83e3
74.99
  • 74.99
  • 74.99
  • 73.19
  • 72.71
  • 70.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.80e3
  • 7.80e3
  • 7.86e3
  • 8.09e3
  • 8.45e3
  • 8.83e3
73.90
  • 73.90
  • 73.67
  • 72.90
  • 71.72
  • 70.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
8.30e3
  • 8.30e3
72.21
  • 72.21
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.71e3
  • 8.71e3
  • 8.71e3
  • 9.60e3
  • 9.96e3
70.82
  • 70.82
  • 70.82
  • 67.85
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.36e3
  • 9.36e3
  • 1.15e4
68.65
  • 68.65
  • 61.61
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.72
  • 62.72
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.42e4
  • 1.85e4
  • 2.05e4
  • 2.10e4
62.53
  • 62.53
  • 52.44
  • 38.03
  • 31.26
  • 29.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.19e4
  • 1.19e4
  • 1.73e4
60.00
  • 60.00
  • 42.01
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
1.28e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
  • 1.34e4
  • 1.49e4
57.14
  • 57.14
  • 57.13
  • 56.24
  • 55.24
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.92
  • 50.92
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.57e4
  • 1.57e4
47.36
  • 47.36
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.66e4
  • 1.66e4
44.45
  • 44.45
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.45
  • 35.45
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.23
  • 34.23
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.79
  • 31.79
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.55
  • 25.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression
Chordata7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000034165.

Cross-references

EnsemblENSDARG00000034165 (lingo1a)
ZFINZDB-GENE-080327-16 (lingo1a)
EMBLBX005076, CR759783
Uniprot/SPTREMBLF1QJ67, F1QJ67_DANRE, F8W4D7, F8W4D7_DANRE

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