D. rerio Gene: calm1b - ENSDARG00000034187 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034187
Namecalm1b
Descriptioncalmodulin 1b [Source:ZFIN;Acc:ZDB-GENE-030804-2]
OrganismDanio rerio (zebrafish)
Synonym(s)calm2g, calmx4, cam3 gamma, cambeta-2, camgamma, q4v949, wu:fi05b08, zgc:73137, zgc:86728

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
211
  • 211
  • 5.90e3
  • 1.49e4
99.30
  • 99.30
  • 80.25
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
383
  • 383
  • 748
98.72
  • 98.72
  • 97.50
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
460
  • 460
98.46
  • 98.46
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
611
  • 611
  • 1.36e3
  • 3.85e3
  • 4.29e3
  • 4.34e3
  • 5.37e3
  • 7.65e3
  • 1.22e4
  • 1.23e4
  • 1.47e4
97.96
  • 97.96
  • 95.45
  • 87.12
  • 85.65
  • 85.48
  • 82.01
  • 74.39
  • 59.22
  • 58.80
  • 50.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
666
  • 666
  • 3.45e3
  • 5.58e3
  • 5.82e3
97.77
  • 97.77
  • 88.45
  • 81.32
  • 80.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
776
  • 776
97.40
  • 97.40
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.02e3
  • 1.02e3
  • 1.72e3
  • 1.76e3
96.60
  • 96.60
  • 94.25
  • 94.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.19e3
  • 1.19e3
96.01
  • 96.01
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.56e3
  • 1.56e3
  • 2.46e3
  • 3.13e3
  • 5.18e3
  • 6.62e3
  • 9.64e3
  • 1.12e4
  • 1.27e4
  • 1.28e4
  • 1.37e4
  • 1.43e4
  • 1.43e4
  • 1.55e4
94.78
  • 94.78
  • 91.76
  • 89.53
  • 82.66
  • 77.83
  • 67.73
  • 62.56
  • 57.42
  • 57.23
  • 54.25
  • 52.25
  • 51.97
  • 48.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
93.01
  • 93.01
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
  • 8.79e3
92.86
  • 92.86
  • 70.58
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.33e3
  • 2.33e3
92.19
  • 92.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.75
  • 91.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.34
  • 89.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.58
  • 87.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.20
  • 85.20
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
5.34e3
  • 5.34e3
  • 5.98e3
82.14
  • 82.14
  • 79.99
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.60e3
  • 5.60e3
  • 5.98e3
  • 5.98e3
  • 6.40e3
  • 6.40e3
  • 1.12e4
  • 1.17e4
81.24
  • 81.24
  • 79.99
  • 79.99
  • 78.56
  • 78.56
  • 62.49
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
5.98e3
  • 5.98e3
  • 6.54e3
  • 6.54e3
  • 7.47e3
  • 7.83e3
  • 1.07e4
79.99
  • 79.99
  • 78.12
  • 78.12
  • 74.99
  • 73.79
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.29e3
  • 6.29e3
  • 6.29e3
  • 6.29e3
  • 6.64e3
  • 7.47e3
78.94
  • 78.94
  • 78.94
  • 78.94
  • 77.77
  • 74.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
6.40e3
  • 6.40e3
  • 6.50e3
  • 6.72e3
  • 6.72e3
  • 8.01e3
78.56
  • 78.56
  • 78.25
  • 77.49
  • 77.49
  • 73.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.44e3
  • 6.44e3
78.44
  • 78.44
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.54e3
  • 6.54e3
  • 6.54e3
  • 7.47e3
  • 7.47e3
  • 8.15e3
78.12
  • 78.12
  • 78.12
  • 74.99
  • 74.99
  • 72.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.54e3
  • 6.54e3
  • 7.03e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
78.12
  • 78.12
  • 76.46
  • 74.99
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.08
  • 78.08
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.69e3
  • 6.69e3
  • 9.64e3
77.59
  • 77.59
  • 67.74
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
6.79e3
  • 6.79e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.01e3
77.26
  • 77.26
  • 74.99
  • 74.99
  • 74.98
  • 73.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.03e3
  • 7.03e3
  • 7.03e3
76.46
  • 76.46
  • 76.46
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.15e3
  • 7.15e3
  • 7.47e3
  • 7.47e3
76.07
  • 76.07
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.35e3
  • 7.35e3
75.38
  • 75.38
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
74.99
  • 74.99
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
72.70
  • 72.70
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.41e3
  • 8.41e3
71.85
  • 71.85
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.54e3
  • 8.54e3
  • 1.03e4
  • 1.07e4
71.42
  • 71.42
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.06e3
  • 9.06e3
69.65
  • 69.65
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.10e4
  • 1.10e4
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
63.14
  • 63.14
  • 63.14
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.24e4
  • 1.24e4
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.44e4
  • 1.44e4
51.63
  • 51.63
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.52e4
  • 1.52e4
  • 1.57e4
  • 1.75e4
49.23
  • 49.23
  • 47.48
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.65e4
  • 1.65e4
44.67
  • 44.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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