D. rerio Gene: sema3c - ENSDARG00000034300 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034300
Namesema3c
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-105o6.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.81
  • 94.81
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
91.87
  • 91.87
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.21
  • 79.21
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.63
  • 62.63
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.82e4
62.46
  • 62.46
  • 39.01
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.99e4
62.41
  • 62.41
  • 33.41
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.28
  • 60.28
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.16
  • 59.16
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.26e4
  • 1.26e4
  • 1.35e4
  • 1.48e4
  • 1.54e4
  • 1.55e4
57.66
  • 57.66
  • 54.82
  • 50.43
  • 48.52
  • 48.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
1.33e4
  • 1.33e4
  • 1.49e4
  • 1.49e4
55.55
  • 55.55
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.39e4
  • 1.39e4
  • 1.44e4
53.39
  • 53.39
  • 51.85
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.53
  • 51.53
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.74
  • 50.74
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.40
  • 42.40
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.47
  • 40.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.22
  • 39.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.40
  • 35.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.74
  • 33.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000034300 (sema3c)
Uniprot/SPTREMBLF1QGW9, F1QGW9_DANRE
ZFINZDB-GENE-050513-5 (sema3c)

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