D. rerio Gene: irx6a - ENSDARG00000034420 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034420
Nameirx6a
Descriptioniroquois homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040712-5]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:109993, ziro6a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.81e3
  • 5.81e3
80.56
  • 80.56
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.97e3
  • 7.97e3
  • 1.12e4
73.32
  • 73.32
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.60e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.21e4
  • 1.23e4
67.85
  • 67.85
  • 67.85
  • 66.65
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.04e4
  • 1.04e4
  • 1.05e4
  • 1.05e4
  • 1.28e4
  • 1.42e4
65.19
  • 65.19
  • 64.98
  • 64.98
  • 57.11
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.10e4
  • 1.10e4
  • 1.16e4
  • 1.17e4
  • 1.22e4
  • 1.23e4
  • 1.25e4
64.56
  • 64.56
  • 63.14
  • 63.02
  • 61.09
  • 60.84
  • 59.06
  • 58.80
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.10e4
  • 1.10e4
  • 1.25e4
  • 1.32e4
  • 1.34e4
  • 1.39e4
63.32
  • 63.32
  • 58.31
  • 55.86
  • 54.97
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.18e4
  • 1.18e4
  • 1.23e4
60.50
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
58.97
  • 58.97
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.24e4
  • 1.24e4
  • 1.36e4
  • 1.92e4
  • 1.99e4
  • 2.11e4
58.35
  • 58.35
  • 54.35
  • 35.83
  • 33.37
  • 29.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
57.80
  • 57.80
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.31e4
  • 1.31e4
  • 1.42e4
56.01
  • 56.01
  • 52.45
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.35
  • 47.35
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.61e4
  • 1.61e4
  • 1.90e4
46.18
  • 46.18
  • 36.30
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
24.09
  • 24.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC095113, BC165182, BX294178
EnsemblENSDARG00000034420 (irx6a)
Uniprot/SPTREMBLQ503Z8, Q503Z8_DANRE
ZFINZDB-GENE-040712-5 (irx6a)

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