D. rerio Gene: per2 - ENSDARG00000034503 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034503
Nameper2
Descriptionperiod circadian clock 2 [Source:ZFIN;Acc:ZDB-GENE-011220-2]
OrganismDanio rerio (zebrafish)
Synonym(s)fj43b09, per2a, wu:fj43b09, zper2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.29e3
  • 1.29e3
  • 1.63e3
95.69
  • 95.69
  • 94.55
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.15
  • 94.15
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
  • 3.99e3
  • 4.50e3
  • 5.36e3
  • 7.90e3
  • 8.66e3
  • 9.09e3
  • 1.01e4
  • 1.01e4
  • 1.03e4
  • 1.05e4
  • 1.13e4
  • 1.13e4
  • 1.27e4
  • 1.50e4
  • 1.50e4
91.98
  • 91.98
  • 86.63
  • 84.93
  • 82.04
  • 73.55
  • 71.00
  • 69.55
  • 66.27
  • 66.19
  • 65.65
  • 64.68
  • 62.23
  • 62.12
  • 57.38
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.50e3
  • 2.50e3
  • 4.04e3
91.65
  • 91.65
  • 86.49
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.87e3
  • 2.87e3
  • 9.16e3
  • 1.41e4
90.39
  • 90.39
  • 69.32
  • 52.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.04e3
  • 3.04e3
  • 8.71e3
89.82
  • 89.82
  • 70.84
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.35e3
  • 3.35e3
  • 3.89e3
  • 6.55e3
  • 1.12e4
  • 1.12e4
  • 1.20e4
  • 1.39e4
88.77
  • 88.77
  • 86.99
  • 78.08
  • 62.50
  • 62.50
  • 59.86
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.39
  • 88.39
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
3.55e3
  • 3.55e3
  • 8.36e3
  • 8.67e3
  • 9.46e3
  • 9.85e3
  • 9.89e3
  • 1.05e4
  • 1.17e4
  • 1.27e4
  • 1.55e4
88.13
  • 88.13
  • 72.03
  • 70.96
  • 68.34
  • 67.00
  • 66.90
  • 64.77
  • 60.98
  • 57.46
  • 48.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
  • 5.31e3
87.88
  • 87.88
  • 82.23
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.08
  • 85.08
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.19e4
  • 1.24e4
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 59.99
  • 58.32
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.01e3
  • 5.01e3
83.22
  • 83.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.20
  • 83.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.77
  • 82.77
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.50
  • 81.50
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
80.82
  • 80.82
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
80.81
  • 80.81
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
5.80e3
  • 5.80e3
  • 6.59e3
  • 6.67e3
  • 7.31e3
  • 9.30e3
80.58
  • 80.58
  • 77.92
  • 77.67
  • 75.52
  • 68.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
79.80
  • 79.80
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.78
  • 79.78
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.28e3
  • 6.28e3
78.98
  • 78.98
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.65e3
  • 6.65e3
77.75
  • 77.75
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.71e3
  • 6.71e3
77.53
  • 77.53
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.45e3
  • 7.45e3
75.07
  • 75.07
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 75.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.12
  • 74.12
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.28
  • 70.28
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.02e3
  • 9.02e3
  • 9.97e3
  • 1.08e4
  • 1.08e4
  • 1.22e4
  • 1.27e4
69.81
  • 69.81
  • 66.63
  • 63.88
  • 63.88
  • 59.00
  • 57.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.80e3
  • 9.80e3
67.19
  • 67.19
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.87e3
  • 9.87e3
66.95
  • 66.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.49
  • 65.49
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.12
  • 60.12
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.26e4
  • 1.26e4
  • 1.35e4
  • 1.39e4
57.87
  • 57.87
  • 54.73
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
1.28e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
57.14
  • 57.14
  • 57.13
  • 56.24
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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