D. rerio Gene: chodl - ENSDARG00000034528 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034528
Namechodl
Descriptionchondrolectin [Source:ZFIN;Acc:ZDB-GENE-050417-36]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:110088

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
5.77e3
  • 5.77e3
  • 1.16e4
  • 1.49e4
  • 1.49e4
80.67
  • 80.67
  • 61.09
  • 50.20
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.57e3
  • 6.57e3
78.00
  • 78.00
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
7.03e3
  • 7.03e3
  • 7.47e3
  • 8.22e3
76.46
  • 76.46
  • 74.99
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 8.40e3
  • 8.96e3
  • 9.96e3
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.24e4
74.99
  • 74.99
  • 71.86
  • 69.99
  • 66.65
  • 62.49
  • 60.70
  • 60.70
  • 60.70
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
  • 1.65e4
73.28
  • 73.28
  • 44.85
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.04e3
  • 8.04e3
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.21e4
  • 1.21e4
73.07
  • 73.07
  • 62.48
  • 62.48
  • 61.34
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.33e3
  • 8.33e3
  • 1.49e4
72.10
  • 72.10
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.53e3
  • 8.53e3
  • 1.14e4
  • 1.14e4
  • 1.21e4
  • 1.23e4
71.43
  • 71.43
  • 61.75
  • 61.75
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
8.56e3
  • 8.56e3
  • 8.93e3
  • 9.21e3
  • 1.11e4
  • 1.11e4
71.32
  • 71.32
  • 70.11
  • 69.17
  • 62.94
  • 62.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.89e3
  • 8.89e3
  • 9.76e3
70.22
  • 70.22
  • 67.31
AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.96e3
  • 8.96e3
  • 9.60e3
  • 9.60e3
  • 1.22e4
  • 1.22e4
69.99
  • 69.99
  • 67.85
  • 67.85
  • 59.08
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.18e4
  • 1.23e4
66.66
  • 66.66
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.19e4
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.23e4
66.65
  • 66.65
  • 64.69
  • 64.69
  • 60.00
  • 59.36
  • 59.36
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.05e4
  • 1.05e4
  • 1.20e4
  • 1.26e4
64.99
  • 64.99
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
64.98
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.10e4
  • 1.10e4
  • 1.17e4
  • 1.22e4
  • 1.23e4
  • 1.25e4
64.56
  • 64.56
  • 63.14
  • 63.02
  • 60.84
  • 59.06
  • 58.80
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.23e4
62.49
  • 62.49
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.27e4
  • 1.27e4
  • 1.56e4
57.42
  • 57.42
  • 47.75
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.88
  • 56.88
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.88
  • 52.88
AEIR
  • AEIR
CL:0000100motor neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.66
  • 47.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.81
  • 42.81
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.73
  • 30.73
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.19
  • 22.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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