D. rerio Gene: celf3a - ENSDARG00000034668 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034668
Namecelf3a
Descriptioncugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
OrganismDanio rerio (zebrafish)
Synonym(s)celf3, etr-1, etr1, q6p953, tnrc4
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
714
  • 714
  • 1.91e3
  • 3.90e3
  • 4.54e3
97.61
  • 97.61
  • 93.62
  • 86.95
  • 84.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.11e3
  • 1.11e3
  • 1.99e3
  • 3.02e3
  • 3.34e3
  • 4.46e3
  • 5.19e3
  • 8.82e3
  • 1.08e4
  • 1.13e4
  • 1.42e4
96.28
  • 96.28
  • 93.34
  • 89.90
  • 88.83
  • 85.08
  • 82.64
  • 70.47
  • 63.78
  • 62.17
  • 52.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.27e3
  • 1.27e3
95.74
  • 95.74
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.17e3
  • 3.17e3
  • 6.55e3
89.39
  • 89.39
  • 78.08
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.88e3
  • 4.88e3
  • 5.42e3
  • 5.95e3
83.67
  • 83.67
  • 81.84
  • 80.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000104life cycle
6.57e3
  • 6.57e3
  • 7.72e3
  • 9.10e3
  • 1.03e4
  • 1.13e4
  • 1.14e4
  • 1.21e4
  • 1.26e4
  • 1.33e4
  • 1.34e4
  • 1.41e4
  • 1.42e4
  • 1.44e4
  • 1.49e4
  • 1.50e4
78.02
  • 78.02
  • 74.16
  • 69.52
  • 65.41
  • 62.29
  • 61.67
  • 59.44
  • 57.91
  • 55.39
  • 55.29
  • 52.82
  • 52.44
  • 51.79
  • 49.98
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.31e3
  • 7.31e3
75.52
  • 75.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
73.32
  • 73.32
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
8.22e3
  • 8.22e3
  • 1.13e4
  • 1.15e4
  • 1.29e4
  • 1.42e4
72.47
  • 72.47
  • 62.28
  • 61.58
  • 56.65
  • 52.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.28
  • 72.28
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
67.31
  • 67.31
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.98e3
  • 9.98e3
  • 1.23e4
66.57
  • 66.57
  • 58.78
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.97
  • 65.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.38
  • 63.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.28
  • 63.28
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.11e4
  • 1.11e4
  • 1.37e4
  • 1.38e4
  • 1.44e4
  • 1.68e4
  • 1.69e4
62.69
  • 62.69
  • 54.15
  • 53.69
  • 51.81
  • 43.69
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.17
  • 61.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.39
  • 58.39
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.36
  • 58.36
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.90
  • 57.90
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.26e4
  • 1.26e4
57.84
  • 57.84
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
57.47
  • 57.47
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
56.93
  • 56.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.77
  • 56.77
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.37e4
  • 1.37e4
54.03
  • 54.03
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.28
  • 53.28
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.80
  • 51.80
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.58e4
  • 1.58e4
  • 1.59e4
47.18
  • 47.18
  • 46.89
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Bilateria4 genesCompare expression
Opisthokonta6 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000034668.

Cross-references

EnsemblENSDARG00000034668 (celf3a)
ZFINZDB-GENE-000501-2 (celf3a)
EMBLAB032725, BC060923, BX248499
Uniprot/SWISSPROTCELF3_DANRE, Q9IBD1

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