D. rerio Gene: scel - ENSDARG00000034677 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034677
Namescel
Descriptionsciellin [Source:ZFIN;Acc:ZDB-GENE-030616-15]
OrganismDanio rerio (zebrafish)
Synonym(s)si:by173d22.2, wu:fc20b10

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
632
  • 632
  • 3.56e3
97.89
  • 97.89
  • 88.07
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.22e3
  • 1.22e3
  • 2.75e3
  • 2.86e3
  • 3.60e3
  • 4.66e3
  • 4.77e3
  • 5.83e3
  • 6.78e3
  • 6.98e3
  • 7.90e3
95.92
  • 95.92
  • 90.80
  • 90.43
  • 87.95
  • 84.39
  • 84.01
  • 80.47
  • 77.29
  • 76.64
  • 73.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
  • 1.98e3
95.89
  • 95.89
  • 93.38
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.50
  • 95.50
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.36
  • 93.36
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.38e3
  • 2.38e3
  • 4.08e3
  • 4.63e3
92.03
  • 92.03
  • 86.33
  • 84.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
  • 5.32e3
  • 6.45e3
  • 7.03e3
  • 7.06e3
  • 7.40e3
  • 7.57e3
  • 7.89e3
  • 8.62e3
  • 9.09e3
  • 9.24e3
  • 1.13e4
  • 1.32e4
  • 1.46e4
  • 1.50e4
86.96
  • 86.96
  • 82.20
  • 78.39
  • 76.48
  • 76.37
  • 75.24
  • 74.66
  • 73.58
  • 71.13
  • 69.58
  • 69.05
  • 62.20
  • 55.83
  • 51.01
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
  • 1.78e4
86.24
  • 86.24
  • 40.31
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.31e3
  • 4.31e3
85.57
  • 85.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
6.00e3
  • 6.00e3
  • 8.85e3
  • 9.89e3
  • 9.99e3
  • 1.04e4
  • 1.25e4
79.91
  • 79.91
  • 70.35
  • 66.90
  • 66.54
  • 65.29
  • 58.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.90
  • 76.90
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.26e3
  • 8.26e3
  • 1.84e4
72.33
  • 72.33
  • 38.26
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.81e3
  • 9.81e3
67.14
  • 67.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.69
  • 66.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.24
  • 66.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.02e4
  • 1.02e4
  • 1.04e4
  • 1.10e4
65.91
  • 65.91
  • 65.22
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.39
  • 64.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.10e4
  • 1.10e4
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.18e4
  • 1.18e4
60.61
  • 60.61
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.87
  • 58.87
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.71
  • 57.71
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.03
  • 57.03
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.10
  • 56.10
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e4
  • 1.42e4
52.43
  • 52.43
AEIR
  • AEIR
UBERON:0001772corneal epithelium
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.12
  • 48.12
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.29
  • 47.29
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.68e4
  • 1.68e4
43.64
  • 43.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.85
  • 35.85
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.05
  • 30.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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