D. rerio Gene: med6 - ENSDARG00000034734 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034734
Namemed6
Descriptionmediator complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-040625-61]
OrganismDanio rerio (zebrafish)
Synonym(s)fa14c11, wu:fa14c11, zgc:86933
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.33e3
  • 1.33e3
  • 1.67e3
  • 1.73e3
  • 1.77e3
  • 2.46e3
  • 3.06e3
95.54
  • 95.54
  • 94.42
  • 94.22
  • 94.07
  • 91.75
  • 89.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.21
  • 95.21
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.49e3
  • 1.49e3
  • 1.88e3
  • 1.89e3
  • 1.95e3
  • 2.95e3
95.02
  • 95.02
  • 93.69
  • 93.67
  • 93.48
  • 90.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
1.87e3
  • 1.87e3
  • 2.03e3
  • 2.16e3
  • 2.18e3
  • 2.86e3
  • 3.55e3
  • 4.15e3
  • 4.52e3
  • 4.67e3
  • 5.48e3
  • 6.36e3
  • 6.46e3
  • 7.21e3
  • 9.00e3
93.73
  • 93.73
  • 93.20
  • 92.76
  • 92.71
  • 90.44
  • 88.11
  • 86.10
  • 84.88
  • 84.36
  • 81.64
  • 78.70
  • 78.36
  • 75.87
  • 69.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.02e3
  • 2.02e3
  • 2.66e3
  • 5.85e3
  • 1.11e4
93.23
  • 93.23
  • 91.08
  • 80.41
  • 62.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.06e3
  • 2.06e3
93.10
  • 93.10
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.24e3
  • 2.24e3
92.51
  • 92.51
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.46e3
  • 2.46e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.55e3
  • 2.55e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.71e3
  • 2.71e3
  • 2.97e3
  • 3.07e3
  • 3.32e3
  • 3.33e3
  • 3.34e3
  • 3.38e3
  • 3.52e3
  • 5.02e3
  • 5.34e3
90.93
  • 90.93
  • 90.05
  • 89.74
  • 88.89
  • 88.86
  • 88.83
  • 88.70
  • 88.22
  • 83.18
  • 82.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
  • 7.72e3
90.01
  • 90.01
  • 74.16
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
89.90
  • 89.90
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.03e3
  • 3.03e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.09e3
  • 3.09e3
  • 6.72e3
89.67
  • 89.67
  • 77.52
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.52
  • 89.52
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.57e3
  • 3.57e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.41
  • 87.41
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
87.17
  • 87.17
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.69
  • 86.69
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
  • 5.53e3
86.31
  • 86.31
  • 81.48
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.45
  • 85.45
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.58e3
  • 4.58e3
84.68
  • 84.68
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.64
  • 84.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.02
  • 84.02
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.86
  • 82.86
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.27
  • 82.27
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.30e3
  • 5.30e3
  • 5.90e3
  • 6.58e3
82.25
  • 82.25
  • 80.26
  • 77.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.34e3
  • 5.34e3
  • 5.79e3
82.14
  • 82.14
  • 80.61
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
78.34
  • 78.34
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.34e3
  • 7.34e3
75.44
  • 75.44
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.41e3
  • 7.41e3
75.20
  • 75.20
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.55
  • 74.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000034734.

Cross-references

EnsemblENSDARG00000034734 (med6)
ZFINZDB-GENE-040625-61 (med6)
EMBLBC071547, CR354599
Uniprot/SPTREMBLE9QI12, E9QI12_DANRE
Uniprot/SWISSPROTMED6_DANRE, Q6IQ63

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