D. rerio Gene: rab13 - ENSDARG00000034771 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034771
Namerab13
DescriptionRAB13, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-30]
OrganismDanio rerio (zebrafish)
Synonym(s)cb764, hm:zeh0455

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.31e3
  • 1.31e3
95.62
  • 95.62
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
  • 3.31e3
95.10
  • 95.10
  • 88.91
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.19
  • 93.19
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
2.05e3
  • 2.05e3
  • 3.79e3
  • 3.92e3
  • 4.09e3
  • 4.19e3
  • 4.22e3
  • 4.47e3
  • 5.35e3
  • 5.76e3
  • 9.00e3
93.14
  • 93.14
  • 87.30
  • 86.87
  • 86.32
  • 85.98
  • 85.87
  • 85.04
  • 82.08
  • 80.72
  • 69.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
91.95
  • 91.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.61
  • 91.61
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.53e3
  • 2.53e3
  • 2.64e3
  • 3.29e3
  • 3.33e3
  • 4.21e3
91.53
  • 91.53
  • 91.17
  • 88.99
  • 88.86
  • 85.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.66e3
  • 2.66e3
91.10
  • 91.10
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.76e3
  • 2.76e3
90.75
  • 90.75
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.02e3
  • 3.02e3
  • 4.30e3
  • 1.15e4
89.88
  • 89.88
  • 85.61
  • 61.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
89.18
  • 89.18
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.25e3
  • 3.25e3
89.11
  • 89.11
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.40e3
  • 3.40e3
  • 1.39e4
88.60
  • 88.60
  • 53.57
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.61e3
  • 3.61e3
87.90
  • 87.90
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.04
  • 86.04
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
4.38e3
  • 4.38e3
  • 4.95e3
  • 5.14e3
  • 5.70e3
  • 5.70e3
  • 6.36e3
  • 6.55e3
  • 6.68e3
  • 7.22e3
  • 7.32e3
  • 7.68e3
  • 7.69e3
  • 8.02e3
  • 1.08e4
  • 1.32e4
  • 1.41e4
  • 1.47e4
  • 1.49e4
85.35
  • 85.35
  • 83.42
  • 82.79
  • 80.90
  • 80.90
  • 78.70
  • 78.06
  • 77.65
  • 75.82
  • 75.48
  • 74.30
  • 74.26
  • 73.15
  • 63.73
  • 55.87
  • 52.87
  • 50.90
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
4.41e3
  • 4.41e3
  • 4.54e3
  • 4.93e3
  • 5.65e3
  • 6.45e3
  • 7.79e3
85.24
  • 85.24
  • 84.79
  • 83.51
  • 81.07
  • 78.40
  • 73.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
  • 1.04e4
84.76
  • 84.76
  • 65.24
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.63e3
  • 4.63e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.64e3
  • 4.64e3
  • 8.63e3
  • 1.65e4
84.48
  • 84.48
  • 71.10
  • 44.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.88e3
  • 4.88e3
83.66
  • 83.66
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.70
  • 81.70
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
5.55e3
  • 5.55e3
  • 6.41e3
  • 8.19e3
81.43
  • 81.43
  • 78.52
  • 72.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.66e3
  • 5.66e3
  • 1.13e4
81.06
  • 81.06
  • 62.22
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.71
  • 79.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.07e3
  • 6.07e3
79.66
  • 79.66
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.57
  • 77.57
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
8.04e3
  • 8.04e3
  • 9.25e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.10e4
73.07
  • 73.07
  • 69.03
  • 67.63
  • 67.48
  • 66.65
  • 66.65
  • 66.65
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.81
  • 66.81
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.60
  • 66.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC053195, BX004983
EnsemblENSDARG00000034771 (rab13)
Uniprot/SPTREMBLE9QI28, E9QI28_DANRE
Uniprot/SWISSPROTQ7T3A4, RAB13_DANRE
ZFINZDB-GENE-030826-30 (rab13)

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