D. rerio Gene: ncapd3 - ENSDARG00000034773 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000034773
Namencapd3
Descriptionnon-SMC condensin II complex, subunit D3 [Source:ZFIN;Acc:ZDB-GENE-040426-737]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd2253, zgc:55549

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.81e3
  • 3.81e3
87.25
  • 87.25
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.08e3
  • 4.08e3
  • 4.28e3
  • 4.45e3
  • 4.83e3
  • 5.01e3
  • 5.03e3
  • 5.94e3
  • 8.65e3
  • 1.19e4
  • 1.36e4
86.34
  • 86.34
  • 85.67
  • 85.09
  • 83.83
  • 83.22
  • 83.15
  • 80.12
  • 71.03
  • 60.30
  • 54.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.23e3
  • 4.23e3
  • 6.46e3
85.85
  • 85.85
  • 78.38
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
4.40e3
  • 4.40e3
  • 5.54e3
  • 5.69e3
  • 6.24e3
  • 6.96e3
  • 7.62e3
85.28
  • 85.28
  • 81.44
  • 80.95
  • 79.11
  • 76.70
  • 74.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.54e3
  • 4.54e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
4.57e3
  • 4.57e3
  • 5.20e3
  • 6.67e3
  • 8.71e3
  • 9.24e3
84.70
  • 84.70
  • 82.58
  • 77.66
  • 70.83
  • 69.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.19
  • 83.19
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.15e3
  • 5.15e3
82.75
  • 82.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.11
  • 80.11
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
  • 1.90e4
79.87
  • 79.87
  • 36.48
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.60
  • 79.60
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
6.26e3
  • 6.26e3
  • 6.38e3
  • 6.54e3
  • 6.54e3
  • 6.60e3
  • 6.75e3
  • 6.77e3
  • 6.96e3
  • 7.35e3
  • 9.80e3
  • 1.02e4
  • 1.14e4
  • 1.23e4
  • 1.23e4
  • 1.46e4
  • 1.50e4
79.03
  • 79.03
  • 78.63
  • 78.11
  • 78.10
  • 77.92
  • 77.41
  • 77.32
  • 76.71
  • 75.39
  • 67.19
  • 65.79
  • 61.67
  • 58.97
  • 58.85
  • 51.12
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.47e3
  • 6.47e3
78.32
  • 78.32
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.07e3
  • 7.07e3
76.33
  • 76.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.24e3
  • 7.24e3
  • 1.87e4
75.77
  • 75.77
  • 37.49
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.61
  • 74.61
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.72e3
  • 7.72e3
74.16
  • 74.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.48e3
  • 8.48e3
71.62
  • 71.62
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
  • 1.07e4
69.43
  • 69.43
  • 64.06
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.05e4
  • 1.05e4
  • 1.24e4
  • 1.24e4
64.86
  • 64.86
  • 58.39
  • 58.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
  • 1.94e4
61.11
  • 61.11
  • 35.04
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.19
  • 60.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.94
  • 57.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.22
  • 57.22
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.89
  • 54.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.45
  • 54.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.04
  • 51.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.82
  • 48.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.82
  • 45.82
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.95
  • 36.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.75
  • 36.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBX284619
EnsemblENSDARG00000034773 (ncapd3)
Uniprot/SPTREMBLF1R935, F1R935_DANRE
ZFINZDB-GENE-040426-737 (ncapd3)

Do not show this banner again