D. rerio Gene: pdcd10a - ENSDARG00000035054 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035054
Namepdcd10a
Descriptionprogrammed cell death 10a [Source:ZFIN;Acc:ZDB-GENE-040426-1432]
OrganismDanio rerio (zebrafish)
Synonym(s)a8dz91, ccm3a, pdcd10, zgc:65826
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
1.37e3
  • 1.37e3
  • 1.24e4
  • 1.49e4
95.41
  • 95.41
  • 58.33
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.34
  • 94.34
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.71e3
  • 1.71e3
94.27
  • 94.27
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
94.13
  • 94.13
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.86
  • 93.86
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
  • 2.89e3
93.57
  • 93.57
  • 90.33
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.94e3
  • 1.94e3
93.50
  • 93.50
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.09e3
  • 2.09e3
  • 4.06e3
  • 1.22e4
92.99
  • 92.99
  • 86.39
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.78
  • 92.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.16e3
  • 2.16e3
  • 1.50e4
92.76
  • 92.76
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
2.17e3
  • 2.17e3
  • 2.23e3
  • 2.35e3
  • 2.98e3
  • 2.99e3
92.75
  • 92.75
  • 92.52
  • 92.14
  • 90.02
  • 90.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
2.22e3
  • 2.22e3
  • 2.44e3
  • 2.77e3
  • 3.35e3
  • 3.37e3
  • 3.80e3
  • 3.95e3
  • 3.97e3
  • 4.37e3
  • 9.43e3
92.56
  • 92.56
  • 91.82
  • 90.74
  • 88.78
  • 88.70
  • 87.27
  • 86.78
  • 86.72
  • 85.36
  • 68.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
2.27e3
  • 2.27e3
  • 3.70e3
  • 7.47e3
  • 1.12e4
92.40
  • 92.40
  • 87.63
  • 75.00
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.42e3
  • 2.42e3
91.91
  • 91.91
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.44e3
  • 2.44e3
  • 2.63e3
91.82
  • 91.82
  • 91.19
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.64
  • 91.64
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.55e3
  • 2.55e3
  • 2.98e3
  • 3.10e3
  • 3.57e3
  • 3.65e3
  • 3.77e3
91.45
  • 91.45
  • 90.03
  • 89.62
  • 88.05
  • 87.79
  • 87.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
2.72e3
  • 2.72e3
  • 3.30e3
  • 3.49e3
  • 3.74e3
  • 3.76e3
  • 3.80e3
  • 3.95e3
  • 4.04e3
  • 4.05e3
  • 4.07e3
  • 4.09e3
  • 4.10e3
  • 4.67e3
  • 4.72e3
  • 5.57e3
  • 1.39e4
  • 1.45e4
  • 1.49e4
90.88
  • 90.88
  • 88.96
  • 88.32
  • 87.47
  • 87.41
  • 87.28
  • 86.76
  • 86.49
  • 86.43
  • 86.37
  • 86.32
  • 86.28
  • 84.37
  • 84.21
  • 81.34
  • 53.44
  • 51.56
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.81e3
  • 2.81e3
  • 3.12e3
  • 4.50e3
90.60
  • 90.60
  • 89.54
  • 84.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.07
  • 90.07
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.40e3
  • 3.40e3
88.63
  • 88.63
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.51e3
  • 3.51e3
  • 5.86e3
  • 8.17e3
  • 8.25e3
88.26
  • 88.26
  • 80.39
  • 72.63
  • 72.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
87.71
  • 87.71
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.88e3
  • 3.88e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.24e3
  • 6.24e3
79.10
  • 79.10
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.56e3
  • 7.56e3
74.69
  • 74.69
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
71.64
  • 71.64
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
9.68e3
  • 9.68e3
  • 1.31e4
67.57
  • 67.57
  • 56.24
AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072368 cell stage
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000039Larval:Days 7-13
  • UBERON:0000068embryo stage
1.33e4
  • 1.33e4
  • 1.49e4
  • 1.50e4
55.55
  • 55.55
  • 50.00
  • 49.91
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000035054.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000035054.

Cross-references

EnsemblENSDARG00000035054 (pdcd10a)
ZFINZDB-GENE-040426-1432 (pdcd10a)
EMBLAL845366, BC056552
Uniprot/SWISSPROTPD10A_DANRE, Q6PHH3

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