D. rerio Gene: fgf13a - ENSDARG00000035056 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035056
Namefgf13a
Descriptionfibroblast growth factor 13a [Source:ZFIN;Acc:ZDB-GENE-041114-101]
OrganismDanio rerio (zebrafish)
Synonym(s)fgf13, fgf13 {eco:0000313|embl:aah85439.1,gn eco:0000313|zfin:zdb-gene-041114-101}, zgc:101784

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.73e3
  • 1.73e3
  • 7.47e3
  • 8.15e3
94.20
  • 94.20
  • 75.00
  • 72.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.30e3
  • 2.30e3
92.29
  • 92.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
90.22
  • 90.22
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
4.29e3
  • 4.29e3
  • 5.53e3
  • 5.66e3
  • 5.76e3
  • 6.38e3
85.64
  • 85.64
  • 81.49
  • 81.04
  • 80.72
  • 78.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.87e3
  • 4.87e3
  • 5.49e3
83.70
  • 83.70
  • 81.61
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.87e3
  • 4.87e3
83.68
  • 83.68
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.77e3
  • 5.77e3
  • 9.96e3
80.67
  • 80.67
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.67e3
  • 6.67e3
  • 9.96e3
77.65
  • 77.65
  • 66.64
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.08e3
  • 7.08e3
  • 7.47e3
  • 8.09e3
  • 1.26e4
  • 1.26e4
76.30
  • 76.30
  • 74.99
  • 72.90
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.97e3
  • 7.97e3
  • 9.96e3
  • 1.07e4
  • 1.17e4
  • 1.17e4
74.99
  • 74.99
  • 73.32
  • 73.32
  • 66.66
  • 64.27
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.83e3
  • 7.83e3
  • 8.22e3
  • 9.07e3
  • 1.17e4
  • 1.20e4
73.79
  • 73.79
  • 72.48
  • 69.62
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.04e3
  • 8.04e3
  • 8.71e3
73.07
  • 73.07
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.22e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
  • 1.15e4
  • 1.22e4
72.48
  • 72.48
  • 72.48
  • 71.41
  • 61.34
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.22e3
  • 8.22e3
  • 8.30e3
  • 8.30e3
  • 1.16e4
  • 1.18e4
72.48
  • 72.48
  • 72.21
  • 72.21
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.30e3
  • 8.30e3
  • 8.79e3
  • 8.79e3
  • 1.21e4
  • 1.23e4
72.21
  • 72.21
  • 70.57
  • 70.57
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.45e3
  • 8.45e3
  • 8.65e3
  • 8.72e3
  • 1.17e4
  • 1.22e4
71.72
  • 71.72
  • 71.04
  • 70.81
  • 60.84
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 8.79e3
  • 8.79e3
70.57
  • 70.57
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.51e3
  • 1.03e4
  • 1.21e4
  • 1.21e4
69.98
  • 69.98
  • 69.98
  • 68.16
  • 65.37
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.88e3
  • 9.88e3
66.91
  • 66.91
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.05e4
  • 1.25e4
  • 1.25e4
65.77
  • 65.77
  • 64.69
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.08e4
  • 1.08e4
  • 1.54e4
63.92
  • 63.92
  • 48.31
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.08e4
  • 1.08e4
  • 1.35e4
63.74
  • 63.74
  • 54.77
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.12e4
  • 1.12e4
62.55
  • 62.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.84
  • 57.84
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.28
  • 57.28
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.77
  • 56.77
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.46
  • 53.46
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.83
  • 50.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.04
  • 46.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.44
  • 43.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.49
  • 41.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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