D. rerio Gene: GLDC - ENSDARG00000035120 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035120
NameGLDC
Descriptionglycine dehydrogenase (decarboxylating) [Source:HGNC Symbol;Acc:HGNC:4313]
OrganismDanio rerio (zebrafish)
Synonym(s)gcsp, nkh

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
569
  • 569
  • 755
  • 3.64e3
  • 4.15e3
  • 4.35e3
98.10
  • 98.10
  • 97.47
  • 87.82
  • 86.10
  • 85.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
807
  • 807
97.30
  • 97.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
935
  • 935
96.87
  • 96.87
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.30
  • 96.30
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
1.46e3
  • 1.46e3
  • 1.96e3
  • 2.56e3
  • 2.66e3
  • 3.73e3
  • 3.86e3
95.10
  • 95.10
  • 93.45
  • 91.44
  • 91.08
  • 87.52
  • 87.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
93.58
  • 93.58
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.96e3
  • 1.96e3
  • 8.46e3
93.43
  • 93.43
  • 71.69
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
2.26e3
  • 2.26e3
  • 2.64e3
  • 2.81e3
  • 2.97e3
  • 3.24e3
  • 3.53e3
  • 3.94e3
  • 4.23e3
  • 4.89e3
  • 5.21e3
  • 5.39e3
  • 5.50e3
  • 5.61e3
  • 7.83e3
92.43
  • 92.43
  • 91.16
  • 90.59
  • 90.04
  • 89.15
  • 88.19
  • 86.82
  • 85.82
  • 83.64
  • 82.55
  • 81.95
  • 81.58
  • 81.20
  • 73.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.64e3
  • 2.64e3
  • 2.80e3
  • 3.52e3
  • 3.60e3
  • 5.27e3
  • 5.29e3
  • 5.78e3
  • 6.58e3
  • 1.11e4
  • 1.13e4
91.16
  • 91.16
  • 90.62
  • 88.22
  • 87.93
  • 82.36
  • 82.28
  • 80.65
  • 77.97
  • 62.88
  • 62.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.87e3
  • 2.87e3
90.40
  • 90.40
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.90e3
  • 2.90e3
90.29
  • 90.29
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.97e3
  • 2.97e3
90.07
  • 90.07
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.98e3
  • 2.98e3
  • 5.10e3
  • 6.41e3
90.04
  • 90.04
  • 82.93
  • 78.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.37e3
  • 3.37e3
88.74
  • 88.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.46e3
  • 3.46e3
88.40
  • 88.40
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.50e3
  • 3.50e3
88.29
  • 88.29
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
84.34
  • 84.34
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
  • 5.84e3
82.42
  • 82.42
  • 80.46
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.77
  • 81.77
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.19e3
  • 6.19e3
79.28
  • 79.28
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.85e3
  • 6.85e3
77.07
  • 77.07
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
76.14
  • 76.14
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.62e3
  • 7.62e3
74.49
  • 74.49
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
  • 8.81e3
  • 1.00e4
  • 1.09e4
73.26
  • 73.26
  • 70.51
  • 66.43
  • 63.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.11e3
  • 8.11e3
72.85
  • 72.85
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.96
  • 71.96
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
  • 1.23e4
71.45
  • 71.45
  • 58.74
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.80e3
  • 8.80e3
70.55
  • 70.55
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
70.41
  • 70.41
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
  • 1.09e4
67.76
  • 67.76
  • 63.42
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.95
  • 62.95
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.62
  • 57.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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