D. rerio Gene: sepw1 - ENSDARG00000035136 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035136
Namesepw1
Descriptionselenoprotein W, 1 [Source:ZFIN;Acc:ZDB-GENE-030410-5]
OrganismDanio rerio (zebrafish)
Synonym(s)cb694, fe37b06, wu:fe37b06, wu:fk70h03, zgc:109781

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
134
  • 134
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
159
  • 159
99.47
  • 99.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
182
  • 182
99.39
  • 99.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
231
  • 231
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
283
  • 283
  • 315
99.06
  • 99.06
  • 98.95
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
301
  • 301
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
316
  • 316
  • 387
98.95
  • 98.95
  • 98.71
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
345
  • 345
  • 401
  • 471
  • 476
  • 686
  • 770
  • 1.46e3
  • 1.63e3
  • 1.84e3
  • 1.86e3
98.85
  • 98.85
  • 98.66
  • 98.43
  • 98.41
  • 97.70
  • 97.43
  • 95.12
  • 94.53
  • 93.85
  • 93.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
350
  • 350
  • 355
98.83
  • 98.83
  • 98.81
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
365
  • 365
98.78
  • 98.78
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
442
  • 442
98.52
  • 98.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
448
  • 448
98.50
  • 98.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
574
  • 574
98.08
  • 98.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
579
  • 579
98.06
  • 98.06
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
590
  • 590
  • 727
  • 812
98.03
  • 98.03
  • 97.57
  • 97.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
601
  • 601
  • 700
  • 720
  • 793
  • 872
  • 918
  • 1.05e3
  • 1.09e3
  • 1.14e3
  • 1.19e3
  • 1.24e3
  • 1.36e3
  • 1.50e3
  • 2.98e3
97.99
  • 97.99
  • 97.66
  • 97.59
  • 97.35
  • 97.08
  • 96.93
  • 96.48
  • 96.35
  • 96.18
  • 96.00
  • 95.85
  • 95.45
  • 94.97
  • 90.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
643
  • 643
97.85
  • 97.85
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
661
  • 661
97.79
  • 97.79
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
686
  • 686
  • 1.08e3
  • 1.80e3
  • 1.88e3
  • 2.02e3
  • 3.13e3
97.71
  • 97.71
  • 96.38
  • 93.97
  • 93.71
  • 93.24
  • 89.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
762
  • 762
  • 821
97.45
  • 97.45
  • 97.25
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
820
  • 820
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
947
  • 947
96.83
  • 96.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.12e3
  • 1.12e3
  • 2.46e3
  • 4.00e3
  • 4.88e3
  • 5.89e3
96.26
  • 96.26
  • 91.78
  • 86.60
  • 83.66
  • 80.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.40e3
  • 1.40e3
95.32
  • 95.32
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.54e3
  • 1.54e3
94.83
  • 94.83
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
91.00
  • 91.00
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.55e3
  • 3.55e3
88.11
  • 88.11
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.67e3
  • 3.67e3
  • 4.04e3
  • 5.38e3
  • 5.91e3
87.72
  • 87.72
  • 86.47
  • 81.98
  • 80.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.38e3
  • 4.38e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.47e3
  • 5.47e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
6.64e3
  • 6.64e3
  • 7.47e3
  • 8.30e3
  • 8.53e3
  • 9.51e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
77.77
  • 77.77
  • 75.00
  • 72.22
  • 71.43
  • 68.17
  • 66.66
  • 66.65
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
74.99
  • 74.99
  • 73.07
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.96e3
  • 9.34e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
72.22
  • 72.22
  • 72.22
  • 69.99
  • 68.74
  • 66.66
  • 66.65
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.71e3
  • 8.71e3
  • 8.71e3
70.82
  • 70.82
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.34e3
  • 9.34e3
  • 9.34e3
  • 9.67e3
  • 1.03e4
  • 1.05e4
  • 1.05e4
  • 1.10e4
68.74
  • 68.74
  • 68.74
  • 67.63
  • 65.61
  • 64.98
  • 64.98
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.60e3
  • 9.60e3
  • 9.60e3
67.85
  • 67.85
  • 67.85
AEIR
  • AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.60e3
  • 9.60e3
  • 9.60e3
67.85
  • 67.85
  • 67.85
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.67e3
  • 9.67e3
  • 9.67e3
  • 1.03e4
  • 1.05e4
67.63
  • 67.63
  • 67.63
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
67.63
  • 67.63
  • 65.61
  • 62.48
  • 62.48
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
67.63
  • 67.63
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
66.65
  • 66.65
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.05e4
65.77
  • 65.77
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.02e4
65.77
  • 65.77
  • 65.77
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.04e4
  • 1.04e4
  • 1.05e4
65.19
  • 65.19
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
64.98
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
1.08e4
  • 1.08e4
63.97
  • 63.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX511157
EnsemblENSDARG00000035136 (sepw1)
Uniprot/SPTREMBLE7FAN8, E7FAN8_DANRE, F6NSR1, F6NSR1_DANRE
ZFINZDB-GENE-030410-5 (sepw1)

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