D. rerio Gene: tmtc2b - ENSDARG00000035273 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035273
Nametmtc2b
Descriptiontransmembrane and tetratricopeptide repeat containing 2b [Source:ZFIN;Acc:ZDB-GENE-081031-100]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkeyp-2c8.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.69e3
  • 3.69e3
87.66
  • 87.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.27e3
  • 5.27e3
82.37
  • 82.37
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.23e3
  • 6.23e3
  • 7.96e3
79.14
  • 79.14
  • 73.34
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
73.57
  • 73.57
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.23e4
  • 1.23e4
  • 1.47e4
  • 1.63e4
  • 1.67e4
  • 1.72e4
58.96
  • 58.96
  • 50.72
  • 45.32
  • 44.06
  • 42.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.31e4
  • 1.31e4
  • 1.74e4
56.26
  • 56.26
  • 41.60
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.73
  • 53.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
  • 1.52e4
51.10
  • 51.10
  • 49.22
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.28
  • 48.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.33
  • 44.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.06
  • 43.06
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.15
  • 42.15
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.73e4
  • 1.73e4
  • 1.87e4
42.13
  • 42.13
  • 37.36
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.05
  • 42.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.51
  • 41.51
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.57
  • 40.57
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.91
  • 35.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.08
  • 33.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.61
  • 32.61
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.80
  • 30.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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