D. rerio Gene: dmrt3a - ENSDARG00000035290 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035290
Namedmrt3a
Descriptiondoublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
OrganismDanio rerio (zebrafish)
Synonym(s)a2bfc1, dmrt3, dmrt3a1, q4vus9, q5xjm6, q694v7, q9dd75, zdmart3a, zdmrt3a-1, zgc:101766

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.86e3
  • 7.86e3
  • 8.30e3
  • 8.65e3
  • 8.65e3
  • 8.72e3
  • 1.08e4
  • 1.12e4
73.67
  • 73.67
  • 72.21
  • 71.04
  • 71.04
  • 70.81
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.86e3
  • 7.86e3
  • 8.79e3
  • 8.83e3
  • 1.07e4
  • 1.09e4
  • 1.12e4
  • 1.12e4
73.67
  • 73.67
  • 70.57
  • 70.44
  • 64.26
  • 63.61
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.53e3
  • 8.53e3
  • 9.33e3
71.43
  • 71.43
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:2005272immature gonad
  • ZFS:0000040Larval:Days 14-20
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.49e3
  • 9.49e3
68.22
  • 68.22
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.71e3
  • 9.71e3
  • 9.71e3
  • 1.02e4
  • 1.03e4
  • 1.17e4
  • 1.20e4
  • 1.31e4
  • 1.31e4
67.48
  • 67.48
  • 67.48
  • 65.89
  • 65.37
  • 60.70
  • 59.98
  • 56.23
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.42e4
66.67
  • 66.67
  • 52.47
AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
66.67
  • 66.67
  • 65.61
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.50e4
  • 1.58e4
  • 1.65e4
  • 1.70e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.83e4
62.48
  • 62.48
  • 49.81
  • 46.99
  • 44.91
  • 43.09
  • 40.52
  • 40.35
  • 40.18
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
1.25e4
  • 1.25e4
  • 1.28e4
  • 1.36e4
  • 1.50e4
  • 1.67e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.85e4
58.07
  • 58.07
  • 57.14
  • 54.38
  • 49.83
  • 43.94
  • 40.54
  • 40.40
  • 40.27
  • 38.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
  • 1.40e4
55.86
  • 55.86
  • 53.10
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.58e4
  • 1.58e4
  • 1.71e4
  • 1.73e4
47.03
  • 47.03
  • 42.63
  • 41.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.65e4
  • 1.65e4
  • 1.75e4
44.84
  • 44.84
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.69e4
  • 1.69e4
43.36
  • 43.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.27
  • 43.27
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
  • 2.22e4
38.14
  • 38.14
  • 25.63
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.53e4
  • 2.53e4
15.38
  • 15.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF272964, AY621083, AY621084, BC083273, BX255951
EnsemblENSDARG00000035290 (dmrt3a)
Uniprot/SWISSPROTDMT3A_DANRE, P83758
ZFINZDB-GENE-021220-3 (dmrt3a)

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