D. rerio Gene: capns1a - ENSDARG00000035329 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035329
Namecapns1a
Descriptioncalpain, small subunit 1 a [Source:ZFIN;Acc:ZDB-GENE-030113-3]
OrganismDanio rerio (zebrafish)
Synonym(s)capns1, cb616, wu:fb81g08, wu:fl09e04, zgc:110603, zgc:110603gn, zgc:86795
Orthologs(s)21 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
330
  • 330
98.90
  • 98.90
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
371
  • 371
  • 400
98.76
  • 98.76
  • 98.66
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
416
  • 416
98.61
  • 98.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
427
  • 427
  • 1.52e3
98.57
  • 98.57
  • 94.93
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
497
  • 497
  • 558
  • 654
  • 721
  • 841
  • 1.27e3
  • 2.06e3
  • 2.30e3
  • 2.71e3
  • 2.86e3
98.34
  • 98.34
  • 98.14
  • 97.81
  • 97.59
  • 97.19
  • 95.75
  • 93.09
  • 92.30
  • 90.92
  • 90.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
534
  • 534
98.21
  • 98.21
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
604
  • 604
97.98
  • 97.98
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
666
  • 666
  • 869
  • 1.00e3
97.77
  • 97.77
  • 97.10
  • 96.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
764
  • 764
  • 830
97.44
  • 97.44
  • 97.22
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
800
  • 800
  • 1.10e3
  • 1.87e3
  • 2.15e3
  • 3.11e3
97.32
  • 97.32
  • 96.31
  • 93.75
  • 92.81
  • 89.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
850
  • 850
97.16
  • 97.16
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
855
  • 855
97.14
  • 97.14
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000029Pharyngula:Prim-5
866
  • 866
  • 1.68e3
  • 1.33e4
  • 1.34e4
97.10
  • 97.10
  • 94.39
  • 55.51
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • UBERON:00072334 cell stage
  • ZFS:0000013Blastula:Oblong
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
961
  • 961
  • 973
  • 1.01e3
  • 1.11e3
  • 1.16e3
  • 1.26e3
  • 1.29e3
  • 1.47e3
  • 1.49e3
  • 2.32e3
  • 2.32e3
  • 2.52e3
  • 2.63e3
  • 3.08e3
  • 6.79e3
  • 6.79e3
  • 7.01e3
  • 1.29e4
  • 1.40e4
  • 1.50e4
96.79
  • 96.79
  • 96.74
  • 96.61
  • 96.28
  • 96.13
  • 95.78
  • 95.68
  • 95.07
  • 95.01
  • 92.25
  • 92.23
  • 91.56
  • 91.20
  • 89.68
  • 77.27
  • 77.27
  • 76.52
  • 56.79
  • 53.08
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
971
  • 971
  • 1.24e3
  • 1.56e3
  • 2.08e3
  • 2.19e3
  • 3.34e3
96.75
  • 96.75
  • 95.85
  • 94.78
  • 93.04
  • 92.68
  • 88.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
96.59
  • 96.59
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.28
  • 96.28
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.19e3
  • 1.19e3
96.02
  • 96.02
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.29e3
  • 1.29e3
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.52
  • 95.52
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
95.09
  • 95.09
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0011150pharyngeal arch derived gill
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.75
  • 93.75
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.00e3
  • 2.00e3
93.31
  • 93.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
2.81e3
  • 2.81e3
90.61
  • 90.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
  • 1.50e4
90.41
  • 90.41
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.12e3
  • 4.12e3
86.22
  • 86.22
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
4.57e3
  • 4.57e3
  • 5.17e3
  • 1.01e4
  • 1.11e4
84.71
  • 84.71
  • 82.71
  • 66.21
  • 62.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 9.13e3
  • 1.03e4
  • 1.03e4
74.99
  • 74.99
  • 69.43
  • 65.37
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
8.04e3
  • 8.04e3
  • 9.51e3
  • 9.96e3
  • 1.39e4
73.07
  • 73.07
  • 68.17
  • 66.66
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 9.67e3
  • 1.05e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
70.57
  • 70.57
  • 67.63
  • 64.69
  • 62.48
  • 62.48
  • 62.48
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.34e3
  • 9.34e3
  • 9.67e3
  • 1.05e4
  • 1.05e4
68.74
  • 68.74
  • 67.63
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
9.34e3
  • 9.34e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.20e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.33e4
68.74
  • 68.74
  • 67.63
  • 66.65
  • 66.65
  • 66.65
  • 59.98
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.38
  • 66.38
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.34e4
64.40
  • 64.40
  • 55.21
AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.25e4
63.87
  • 63.87
  • 62.48
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001179epidermal superficial stratum
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000035329.

Cross-references

EnsemblENSDARG00000035329 (capns1a)
ZFINZDB-GENE-030113-3 (capns1a)
EMBLBC092946, BX005407
Uniprot/SPTREMBLQ1LYC9, Q1LYC9_DANRE, Q568A3, Q568A3_DANRE

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