D. rerio Gene: pafah1b2 - ENSDARG00000035352 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035352
Namepafah1b2
Descriptionplatelet-activating factor acetylhydrolase 1b, catalytic subunit 2 [Source:ZFIN;Acc:ZDB-GENE-060526-43]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-139a5.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
1.89e3
  • 1.89e3
  • 4.44e3
  • 5.68e3
  • 7.73e3
  • 1.01e4
  • 1.04e4
  • 1.06e4
  • 1.07e4
  • 1.08e4
  • 1.19e4
93.66
  • 93.66
  • 85.14
  • 80.97
  • 74.13
  • 66.32
  • 65.14
  • 64.36
  • 64.22
  • 63.76
  • 60.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
  • 2.59e3
  • 4.18e3
  • 7.67e3
92.01
  • 92.01
  • 91.32
  • 86.00
  • 74.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.78e3
  • 2.78e3
  • 6.64e3
90.69
  • 90.69
  • 77.76
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
3.47e3
  • 3.47e3
  • 6.30e3
  • 7.05e3
  • 7.47e3
  • 7.70e3
  • 7.87e3
  • 8.50e3
  • 9.36e3
  • 9.40e3
  • 9.54e3
  • 9.60e3
  • 9.86e3
  • 9.92e3
  • 1.02e4
  • 1.50e4
88.38
  • 88.38
  • 78.90
  • 76.40
  • 75.00
  • 74.23
  • 73.65
  • 71.55
  • 68.66
  • 68.54
  • 68.07
  • 67.84
  • 66.99
  • 66.77
  • 65.88
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.04e3
  • 4.04e3
86.47
  • 86.47
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.78e3
  • 5.78e3
  • 7.59e3
  • 9.41e3
80.65
  • 80.65
  • 74.58
  • 68.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.02e3
  • 6.02e3
79.84
  • 79.84
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.38
  • 79.38
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.83e3
  • 7.83e3
73.78
  • 73.78
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.38
  • 72.38
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.38e3
  • 8.38e3
  • 8.44e3
  • 9.14e3
  • 1.06e4
  • 1.07e4
  • 1.11e4
71.94
  • 71.94
  • 71.73
  • 69.41
  • 64.40
  • 64.02
  • 62.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.60e3
  • 8.60e3
  • 9.63e3
71.21
  • 71.21
  • 67.76
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.76e3
  • 8.76e3
70.67
  • 70.67
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.82e3
  • 8.82e3
70.48
  • 70.48
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.82e3
  • 9.82e3
67.12
  • 67.12
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
9.87e3
  • 9.87e3
  • 1.11e4
  • 1.19e4
  • 1.24e4
  • 1.26e4
66.97
  • 66.97
  • 62.71
  • 60.20
  • 58.32
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.44
  • 66.44
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.00e4
  • 1.00e4
  • 1.09e4
66.37
  • 66.37
  • 63.65
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.02e4
  • 1.02e4
66.00
  • 66.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.89
  • 60.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.40
  • 59.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.08
  • 58.08
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.20
  • 57.20
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.58
  • 54.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.57
  • 54.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.19
  • 49.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.77
  • 47.77
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.62
  • 47.62
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.47
  • 47.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC160649, BC163819, BC163859, BX465852
EnsemblENSDARG00000035352 (pafah1b2)
Uniprot/SPTREMBLA2BGB4, A2BGB4_DANRE
ZFINZDB-GENE-060526-43 (pafah1b2)

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