D. rerio Gene: tnpo1 - ENSDARG00000035390 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035390
Nametnpo1
Descriptiontransportin 1 [Source:ZFIN;Acc:ZDB-GENE-080819-1]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.52e3
  • 3.52e3
88.22
  • 88.22
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.90e3
  • 4.90e3
  • 8.00e3
83.58
  • 83.58
  • 73.21
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
4.91e3
  • 4.91e3
  • 6.30e3
83.55
  • 83.55
  • 78.90
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.40
  • 83.40
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
5.04e3
  • 5.04e3
  • 6.24e3
  • 6.89e3
  • 6.90e3
  • 7.20e3
83.12
  • 83.12
  • 79.12
  • 76.94
  • 76.89
  • 75.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.98
  • 81.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.76e3
  • 5.76e3
80.72
  • 80.72
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.92
  • 77.92
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.84e3
  • 6.84e3
  • 7.06e3
77.11
  • 77.11
  • 76.37
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.23e3
  • 7.23e3
75.79
  • 75.79
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.09e3
  • 8.09e3
  • 1.08e4
72.92
  • 72.92
  • 63.73
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.19e3
  • 8.19e3
72.57
  • 72.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.35e3
  • 8.35e3
72.03
  • 72.03
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.55
  • 71.55
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.71
  • 69.71
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.58
  • 69.58
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.74
  • 67.74
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.28
  • 67.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.06
  • 67.06
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
66.87
  • 66.87
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.69
  • 66.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.69
  • 63.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.26
  • 63.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000035390 (tnpo1)
Uniprot/SPTREMBLF1RDR1, F1RDR1_DANRE
ZFINZDB-GENE-080819-1 (tnpo1)

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