D. rerio Gene: btf3 - ENSDARG00000035400 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035400
Namebtf3
Descriptionbasic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb05d06, zgc:153435
Orthologs(s)29 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
107
  • 107
  • 3.24e3
99.65
  • 99.65
  • 89.16
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
135
  • 135
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
137
  • 137
  • 186
  • 193
  • 198
  • 241
  • 246
  • 253
  • 265
  • 884
  • 3.05e3
99.54
  • 99.54
  • 99.38
  • 99.36
  • 99.34
  • 99.20
  • 99.18
  • 99.16
  • 99.12
  • 97.04
  • 89.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
144
  • 144
99.52
  • 99.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
160
  • 160
99.47
  • 99.47
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
169
  • 169
99.44
  • 99.44
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
169
  • 169
  • 197
  • 369
  • 453
  • 461
  • 585
99.44
  • 99.44
  • 99.34
  • 98.77
  • 98.49
  • 98.46
  • 98.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
173
  • 173
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
174
  • 174
  • 183
99.42
  • 99.42
  • 99.39
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
176
  • 176
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
179
  • 179
99.40
  • 99.40
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
179
  • 179
99.40
  • 99.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
187
  • 187
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
187
  • 187
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
188
  • 188
99.37
  • 99.37
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
190
  • 190
  • 235
  • 386
99.37
  • 99.37
  • 99.22
  • 98.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
202
  • 202
  • 785
  • 1.21e4
99.33
  • 99.33
  • 97.37
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
213
  • 213
  • 536
  • 1.25e4
99.29
  • 99.29
  • 98.21
  • 58.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
249
  • 249
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
250
  • 250
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
261
  • 261
  • 283
  • 285
  • 314
  • 318
  • 348
  • 365
  • 418
  • 423
  • 432
  • 437
  • 495
  • 659
  • 2.78e3
  • 1.21e4
  • 1.34e4
  • 1.39e4
  • 1.47e4
99.13
  • 99.13
  • 99.05
  • 99.05
  • 98.95
  • 98.94
  • 98.84
  • 98.78
  • 98.60
  • 98.59
  • 98.56
  • 98.54
  • 98.35
  • 97.80
  • 90.69
  • 59.33
  • 55.06
  • 53.30
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
343
  • 343
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
371
  • 371
98.76
  • 98.76
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
372
  • 372
  • 1.02e3
  • 1.21e3
  • 1.50e3
  • 2.52e3
98.76
  • 98.76
  • 96.58
  • 95.95
  • 94.97
  • 91.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
568
  • 568
98.10
  • 98.10
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
851
  • 851
97.15
  • 97.15
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
  • 2.90e3
  • 3.00e3
  • 4.08e3
95.48
  • 95.48
  • 90.28
  • 89.95
  • 86.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.29e3
  • 2.29e3
92.35
  • 92.35
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.18e3
  • 3.18e3
89.34
  • 89.34
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.31
  • 88.31
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.51e3
  • 4.51e3
84.90
  • 84.90
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
  • 1.38e4
71.65
  • 71.65
  • 53.89
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
56.16
  • 56.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species22 genesCompare expression
Bilateria25 species29 genesCompare expression

Orthology information comes from OMA : ENSDARG00000035400.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000035400.

Cross-references

EnsemblENSDARG00000035400 (btf3)
ZFINZDB-GENE-030131-8731 (btf3)
EMBLBC124351, BC155131, BX530075
Uniprot/SPTREMBLQ08C78, Q08C78_DANRE

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