D. rerio Gene: surf6 - ENSDARG00000035427 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035427
Namesurf6
Descriptionsurfeit 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1333]
OrganismDanio rerio (zebrafish)
Synonym(s)surf6l, zgc:64008

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
566
  • 566
  • 1.39e4
98.11
  • 98.11
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.26e3
  • 1.26e3
  • 1.36e4
95.79
  • 95.79
  • 54.31
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
94.63
  • 94.63
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.72e3
  • 1.72e3
  • 1.21e4
  • 1.22e4
94.24
  • 94.24
  • 59.50
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.76e3
  • 1.76e3
  • 1.94e3
  • 2.20e3
  • 2.53e3
  • 3.14e3
  • 4.39e3
94.11
  • 94.11
  • 93.51
  • 92.63
  • 91.53
  • 89.50
  • 85.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
  • 1.91e3
  • 1.99e3
  • 2.06e3
  • 2.15e3
  • 2.47e3
  • 3.09e3
  • 3.83e3
  • 4.26e3
  • 5.33e3
  • 5.57e3
  • 7.03e3
  • 7.03e3
  • 7.25e3
  • 7.55e3
  • 7.91e3
  • 1.39e4
  • 1.43e4
94.05
  • 94.05
  • 93.61
  • 93.32
  • 93.10
  • 92.81
  • 91.73
  • 89.66
  • 87.17
  • 85.73
  • 82.17
  • 81.34
  • 76.46
  • 76.46
  • 75.72
  • 74.71
  • 73.52
  • 53.44
  • 51.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.51e3
  • 2.51e3
  • 2.85e3
  • 3.10e3
  • 3.16e3
  • 4.26e3
  • 5.81e3
  • 6.09e3
  • 7.41e3
  • 7.66e3
  • 8.09e3
91.58
  • 91.58
  • 90.46
  • 89.62
  • 89.42
  • 85.73
  • 80.54
  • 79.61
  • 75.21
  • 74.34
  • 72.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.56e3
  • 2.56e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.60
  • 89.60
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.11e3
  • 3.11e3
89.57
  • 89.57
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
3.25e3
  • 3.25e3
  • 3.55e3
  • 3.78e3
  • 3.93e3
  • 6.74e3
89.12
  • 89.12
  • 88.10
  • 87.34
  • 86.86
  • 77.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.52
  • 88.52
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.65e3
  • 3.65e3
87.79
  • 87.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.41
  • 87.41
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.52e3
  • 4.52e3
  • 7.70e3
84.87
  • 84.87
  • 74.22
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.25
  • 84.25
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
5.16e3
  • 5.16e3
  • 7.55e3
  • 1.12e4
  • 1.17e4
82.72
  • 82.72
  • 74.74
  • 62.37
  • 60.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.12
  • 82.12
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.65e3
  • 5.65e3
  • 9.87e3
  • 1.49e4
81.09
  • 81.09
  • 66.94
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
81.04
  • 81.04
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.13e3
  • 6.13e3
79.47
  • 79.47
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
  • 8.82e3
79.42
  • 79.42
  • 70.45
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.41e3
  • 6.41e3
  • 1.47e4
78.55
  • 78.55
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.69e3
  • 6.69e3
77.59
  • 77.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.56
  • 77.56
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.85e3
  • 6.85e3
77.06
  • 77.06
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
76.92
  • 76.92
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
  • 9.97e3
76.42
  • 76.42
  • 66.63
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
75.51
  • 75.51
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.05
  • 75.05
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.43e3
  • 8.43e3
  • 9.96e3
  • 9.97e3
71.78
  • 71.78
  • 66.66
  • 66.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.18e3
  • 9.18e3
69.25
  • 69.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.25
  • 63.25
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.33e4
60.50
  • 60.50
  • 59.50
  • 58.80
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.21e4
  • 1.21e4
  • 1.25e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
59.50
  • 59.50
  • 58.31
  • 58.31
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.28
  • 59.28
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
57.87
  • 57.87
  • 57.87
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.50e4
55.82
  • 55.82
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAY648750, CU019641
EnsemblENSDARG00000035427 (surf6)
Uniprot/SPTREMBLQ6DRK9, Q6DRK9_DANRE
ZFINZDB-GENE-040426-1333 (surf6)

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