D. rerio Gene: m17 - ENSDARG00000035435 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035435
Namem17
DescriptionIL-6 subfamily cytokine M17 [Source:ZFIN;Acc:ZDB-GENE-060526-368]
OrganismDanio rerio (zebrafish)
Synonym(s)leukemia inhibitory factor, lif, si:dkeyp-15f12.5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.54
  • 61.54
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.14
  • 57.14
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.39e4
56.79
  • 56.79
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.42e4
54.99
  • 54.99
  • 52.58
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0001700geniculate ganglion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001312dorsal anterior lateral line ganglion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.58
  • 44.58
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
  • 1.97e4
40.30
  • 40.30
  • 33.92
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.84e4
  • 1.84e4
38.41
  • 38.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.35
  • 34.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.03e4
  • 2.03e4
  • 2.07e4
  • 2.27e4
  • 2.39e4
  • 2.45e4
32.06
  • 32.06
  • 30.55
  • 23.96
  • 20.02
  • 17.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.41
  • 29.41
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.89
  • 28.89
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.13e4
  • 2.13e4
  • 2.37e4
28.76
  • 28.76
  • 20.80
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.64
  • 26.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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