D. rerio Gene: histh1l - ENSDARG00000035519 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035519
Namehisth1l
Descriptionhistone H1 like [Source:ZFIN;Acc:ZDB-GENE-050417-145]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb40a10, zgc:110380
Orthologs(s)77 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
145
  • 145
  • 368
  • 562
  • 1.63e3
99.52
  • 99.52
  • 98.77
  • 98.12
  • 94.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
255
  • 255
  • 533
99.15
  • 99.15
  • 98.22
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
295
  • 295
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
326
  • 326
  • 491
  • 545
  • 690
  • 835
  • 1.10e3
  • 1.16e3
  • 1.35e3
  • 1.53e3
  • 1.91e3
  • 1.99e3
  • 2.27e3
  • 2.33e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.17e4
  • 1.22e4
  • 1.34e4
  • 1.47e4
  • 1.49e4
98.91
  • 98.91
  • 98.36
  • 98.18
  • 97.69
  • 97.21
  • 96.31
  • 96.13
  • 95.50
  • 94.88
  • 93.62
  • 93.32
  • 92.39
  • 92.20
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 60.72
  • 59.11
  • 55.05
  • 50.90
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
341
  • 341
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
351
  • 351
  • 450
  • 461
  • 464
  • 555
  • 572
  • 573
  • 852
  • 1.14e3
  • 1.90e3
98.83
  • 98.83
  • 98.50
  • 98.46
  • 98.45
  • 98.14
  • 98.09
  • 98.08
  • 97.15
  • 96.19
  • 93.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
371
  • 371
98.76
  • 98.76
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
419
  • 419
98.60
  • 98.60
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
468
  • 468
  • 3.18e3
  • 1.21e4
98.44
  • 98.44
  • 89.37
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
470
  • 470
  • 493
  • 534
98.43
  • 98.43
  • 98.35
  • 98.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
549
  • 549
  • 1.86e3
  • 1.37e4
98.17
  • 98.17
  • 93.77
  • 54.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
622
  • 622
  • 961
  • 1.29e3
  • 1.32e3
  • 1.45e3
  • 1.81e3
97.92
  • 97.92
  • 96.78
  • 95.69
  • 95.57
  • 95.14
  • 93.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
800
  • 800
97.32
  • 97.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
943
  • 943
96.85
  • 96.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
978
  • 978
96.73
  • 96.73
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.33
  • 96.33
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.06
  • 96.06
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.96
  • 95.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.70e3
  • 1.70e3
94.31
  • 94.31
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.17
  • 93.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.88
  • 92.88
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
2.49e3
  • 2.49e3
  • 3.38e3
  • 1.22e4
  • 1.22e4
  • 1.61e4
91.68
  • 91.68
  • 88.70
  • 59.17
  • 58.99
  • 46.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.85e3
  • 2.85e3
90.45
  • 90.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
90.35
  • 90.35
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
  • 1.38e4
88.13
  • 88.13
  • 53.89
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
84.34
  • 84.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.79
  • 81.79
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.63
  • 65.63
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.04
  • 62.04
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.25e4
  • 1.25e4
58.18
  • 58.18
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
56.16
  • 56.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species77 genesCompare expression

Orthology information comes from OMA : ENSDARG00000035519.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi16 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000035519.

Cross-references

EnsemblENSDARG00000035519 (histh1l)
ZFINZDB-GENE-050417-145 (histh1l)
EMBLBX323062
Uniprot/SPTREMBLA3KPR3, A3KPR3_DANRE

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