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D. rerio Gene: cyp1d1 - ENSDARG00000035569 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035569
Namecyp1d1
Descriptioncytochrome P450, family 1, subfamily D, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-041114-179]
OrganismDanio rerio (zebrafish)
Synonym(s)cyp1d1, zgc:92205
Orthologs(s)6 orthologs
Paralog(s)44 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.77e3
  • 3.77e3
  • 1.12e4
  • 1.21e4
87.36
  • 87.36
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
  • 1.34e4
76.91
  • 76.91
  • 55.08
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.10e3
  • 7.10e3
  • 1.21e4
  • 1.37e4
76.23
  • 76.23
  • 59.62
  • 54.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
76.10
  • 76.10
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
8.04e3
  • 8.04e3
  • 8.71e3
  • 1.12e4
  • 1.12e4
  • 1.19e4
  • 1.24e4
  • 1.26e4
73.07
  • 73.07
  • 70.82
  • 62.49
  • 62.48
  • 59.99
  • 58.32
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.03e3
  • 9.03e3
  • 1.11e4
  • 1.25e4
  • 1.28e4
  • 1.33e4
  • 1.34e4
  • 1.38e4
  • 1.39e4
  • 1.45e4
  • 1.78e4
69.77
  • 69.77
  • 62.81
  • 58.01
  • 57.03
  • 55.62
  • 55.15
  • 53.73
  • 53.37
  • 51.59
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.77
  • 67.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.24
  • 67.24
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
  • 1.23e4
67.09
  • 67.09
  • 58.73
AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.03e4
66.65
  • 66.65
  • 65.61
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.03e4
  • 1.03e4
  • 1.36e4
  • 1.43e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.55e4
  • 1.55e4
  • 1.57e4
  • 1.58e4
  • 1.58e4
  • 1.59e4
  • 1.61e4
  • 1.68e4
65.61
  • 65.61
  • 54.50
  • 52.00
  • 50.68
  • 50.23
  • 49.92
  • 48.04
  • 47.94
  • 47.29
  • 47.04
  • 46.97
  • 46.78
  • 46.18
  • 43.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.36
  • 64.36
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.15e4
64.27
  • 64.27
  • 62.49
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.32
  • 63.32
AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.17e4
63.32
  • 63.32
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.15e4
  • 1.15e4
61.63
  • 61.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.15e4
  • 1.15e4
  • 1.51e4
61.45
  • 61.45
  • 49.32
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.19e4
  • 1.19e4
60.31
  • 60.31
AEIR
  • AEIR
UBERON:0002241chondrocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.19e4
60.00
  • 60.00
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.20e4
  • 1.20e4
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.81
  • 59.81
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.21e4
  • 1.21e4
  • 1.31e4
  • 1.51e4
59.57
  • 59.57
  • 56.03
  • 49.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
  • 1.40e4
57.82
  • 57.82
  • 52.96
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.64
  • 56.64
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.53
  • 56.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.61
  • 55.61
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.50
  • 55.50
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
55.20
  • 55.20
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.43
  • 53.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.73
  • 50.73
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.52
  • 47.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Cross-references

EnsemblENSDARG00000035569 (cyp1d1)
ZFINZDB-GENE-041114-179 (cyp1d1)
EMBLBC085648, BX296526
Uniprot/SPTREMBLQ5U396, Q5U396_DANRE

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