D. rerio Gene: sdf2l1 - ENSDARG00000035631 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035631
Namesdf2l1
Descriptionstromal cell-derived factor 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-46]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc55b04, zgc:92449

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.44e3
  • 1.44e3
  • 1.47e4
95.18
  • 95.18
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
94.12
  • 94.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.44e3
  • 2.44e3
91.83
  • 91.83
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.64e3
  • 2.64e3
91.18
  • 91.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.28e3
  • 3.28e3
  • 5.08e3
  • 5.30e3
  • 6.15e3
  • 7.11e3
89.03
  • 89.03
  • 83.00
  • 82.27
  • 79.42
  • 76.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.30e3
  • 3.30e3
88.96
  • 88.96
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.07
  • 88.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.72e3
  • 3.72e3
87.55
  • 87.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.98
  • 86.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.96
  • 86.96
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
3.99e3
  • 3.99e3
  • 4.72e3
86.65
  • 86.65
  • 84.19
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.24e3
  • 4.24e3
  • 5.36e3
85.81
  • 85.81
  • 82.07
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
  • 8.95e3
85.36
  • 85.36
  • 70.05
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
84.66
  • 84.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.49
  • 84.49
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
4.75e3
  • 4.75e3
  • 6.11e3
84.08
  • 84.08
  • 79.56
AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 6.64e3
  • 8.30e3
  • 9.51e3
  • 9.96e3
  • 1.03e4
83.33
  • 83.33
  • 77.77
  • 72.22
  • 68.17
  • 66.66
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
82.69
  • 82.69
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.73
  • 80.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
  • 7.20e3
80.28
  • 80.28
  • 75.90
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.64
  • 79.64
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.34
  • 79.34
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
6.29e3
  • 6.29e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.57
  • 77.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.46e3
  • 7.46e3
75.04
  • 75.04
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.71e3
74.99
  • 74.99
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.77e3
  • 7.77e3
  • 8.96e3
  • 9.51e3
  • 9.51e3
73.98
  • 73.98
  • 69.98
  • 68.16
  • 68.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.96e3
72.21
  • 72.21
  • 72.21
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.60e3
  • 8.60e3
71.19
  • 71.19
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.60e3
  • 9.60e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
67.85
  • 67.85
  • 66.65
  • 65.77
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.71e3
  • 9.71e3
  • 1.02e4
  • 1.04e4
  • 1.14e4
  • 1.15e4
67.48
  • 67.48
  • 65.89
  • 65.19
  • 61.88
  • 61.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.97
  • 57.97
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX957246
EnsemblENSDARG00000035631 (sdf2l1)
Uniprot/SPTREMBLA2BIR7, A2BIR7_DANRE
ZFINZDB-GENE-040808-46 (sdf2l1)

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