D. rerio Gene: stm - ENSDARG00000035694 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035694
Namestm
Descriptionstarmaker [Source:ZFIN;Acc:ZDB-GENE-031112-4]
OrganismDanio rerio (zebrafish)
Synonym(s)cb885, id:ibd5112, q6udm5, sb:cb148, sb:cb568, sb:cb584

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
134
  • 134
99.56
  • 99.56
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
166
  • 166
  • 396
99.45
  • 99.45
  • 98.68
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
190
  • 190
99.37
  • 99.37
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
624
  • 624
97.91
  • 97.91
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.03e3
  • 1.03e3
  • 1.30e3
  • 3.61e3
  • 3.86e3
  • 6.61e3
96.54
  • 96.54
  • 95.66
  • 87.91
  • 87.08
  • 77.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
1.07e3
  • 1.07e3
  • 2.30e3
  • 3.73e3
96.43
  • 96.43
  • 92.31
  • 87.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000104life cycle
1.47e3
  • 1.47e3
  • 9.96e3
  • 1.49e4
95.08
  • 95.08
  • 66.67
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.49e3
  • 1.49e3
  • 6.72e3
  • 7.80e3
  • 8.22e3
95.00
  • 95.00
  • 77.49
  • 73.90
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
1.49e3
  • 1.49e3
  • 1.49e3
  • 2.13e3
  • 2.24e3
  • 2.60e3
  • 2.72e3
  • 3.15e3
  • 9.96e3
  • 1.28e4
95.00
  • 95.00
  • 95.00
  • 92.86
  • 92.50
  • 91.30
  • 90.91
  • 89.47
  • 66.67
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.57e3
  • 1.57e3
94.74
  • 94.74
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.73e3
  • 1.73e3
  • 3.28e3
94.20
  • 94.20
  • 89.01
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
2.13e3
  • 2.13e3
  • 3.98e3
  • 4.67e3
  • 6.54e3
  • 7.47e3
  • 7.86e3
  • 7.97e3
  • 1.28e4
92.86
  • 92.86
  • 86.66
  • 84.37
  • 78.12
  • 74.99
  • 73.67
  • 73.32
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
2.30e3
  • 2.30e3
  • 2.30e3
  • 3.20e3
92.31
  • 92.31
  • 92.31
  • 89.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.49e3
  • 2.49e3
  • 4.48e3
  • 7.47e3
  • 1.10e4
91.67
  • 91.67
  • 84.99
  • 74.99
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.77e3
  • 2.77e3
90.74
  • 90.74
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.37e3
  • 3.37e3
  • 4.33e3
88.73
  • 88.73
  • 85.49
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
87.87
  • 87.87
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.39e3
  • 4.39e3
85.30
  • 85.30
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.80e3
  • 4.80e3
  • 8.22e3
  • 8.22e3
83.92
  • 83.92
  • 72.48
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000026Segmentation:14-19 somites
5.60e3
  • 5.60e3
81.24
  • 81.24
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
6.93e3
  • 6.93e3
76.81
  • 76.81
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.03e3
  • 7.03e3
  • 7.03e3
  • 8.40e3
  • 8.79e3
76.46
  • 76.46
  • 76.46
  • 71.86
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
  • 9.33e3
74.99
  • 74.99
  • 73.07
  • 73.07
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
73.80
  • 73.80
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
7.97e3
  • 7.97e3
  • 8.96e3
  • 9.19e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
  • 1.08e4
73.32
  • 73.32
  • 69.99
  • 69.22
  • 66.65
  • 64.98
  • 64.69
  • 63.87
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.30e3
  • 8.30e3
  • 9.33e3
72.22
  • 72.22
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
8.54e3
  • 8.54e3
  • 8.83e3
  • 8.96e3
  • 9.10e3
71.41
  • 71.41
  • 70.44
  • 69.98
  • 69.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
9.60e3
  • 9.60e3
  • 9.60e3
  • 9.60e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
67.85
  • 67.85
  • 67.85
  • 67.85
  • 67.85
  • 67.85
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000940posterior lateral line neuromast
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.39e4
63.14
  • 63.14
  • 63.14
  • 61.88
  • 53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
1.15e4
  • 1.15e4
  • 1.17e4
  • 1.24e4
61.53
  • 61.53
  • 60.70
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.16e4
  • 1.16e4
61.09
  • 61.09
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
1.21e4
  • 1.21e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.36e4
  • 1.36e4
59.36
  • 59.36
  • 57.68
  • 57.68
  • 57.13
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
59.29
  • 59.29
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.82
  • 58.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.30
  • 58.30
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.25e4
  • 1.25e4
58.03
  • 58.03
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.17
  • 53.17
AEIR
  • AEIR
UBERON:2000168anterior macula
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2000558posterior macula
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001472anterior lateral line neuromast
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.18
  • 49.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
  • 2.11e4
46.99
  • 46.99
  • 29.27
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.60
  • 41.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.54
  • 38.54
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.22
  • 35.22
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.29
  • 32.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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