D. rerio Gene: sirt3 - ENSDARG00000035819 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035819
Namesirt3
Descriptionsirtuin 3 [Source:ZFIN;Acc:ZDB-GENE-070112-1762]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:158774
Orthologs(s)17 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
88.02
  • 88.02
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
  • 1.12e4
85.52
  • 85.52
  • 62.35
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.19
  • 82.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
80.49
  • 80.49
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
80.05
  • 80.05
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.50
  • 79.50
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.17e3
  • 6.17e3
  • 1.03e4
  • 1.17e4
  • 1.18e4
79.34
  • 79.34
  • 65.43
  • 60.70
  • 60.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.60e3
  • 6.60e3
  • 8.04e3
77.91
  • 77.91
  • 73.10
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.07e3
  • 7.07e3
76.33
  • 76.33
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.21e3
  • 7.21e3
  • 1.63e4
75.86
  • 75.86
  • 45.31
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.34
  • 74.34
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
8.29e3
  • 8.29e3
  • 9.58e3
  • 1.06e4
  • 1.06e4
  • 1.33e4
72.26
  • 72.26
  • 67.92
  • 64.58
  • 64.50
  • 55.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.07
  • 72.07
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.17
  • 70.17
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.26e3
  • 9.26e3
  • 1.12e4
  • 1.20e4
  • 1.25e4
  • 1.29e4
  • 1.34e4
  • 1.43e4
  • 1.48e4
  • 1.49e4
68.99
  • 68.99
  • 62.46
  • 59.81
  • 58.25
  • 56.81
  • 55.06
  • 52.00
  • 50.45
  • 50.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.52e3
  • 9.52e3
68.12
  • 68.12
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
68.01
  • 68.01
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.16
  • 66.16
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.15
  • 65.15
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.06e4
  • 1.06e4
64.42
  • 64.42
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.33
  • 64.33
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.11e4
  • 1.11e4
  • 1.43e4
  • 1.63e4
62.70
  • 62.70
  • 52.10
  • 45.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
1.20e4
  • 1.20e4
  • 1.45e4
  • 1.46e4
  • 1.50e4
  • 1.55e4
  • 1.55e4
  • 1.56e4
  • 1.57e4
  • 1.57e4
  • 1.58e4
  • 1.61e4
  • 1.66e4
  • 1.67e4
  • 1.67e4
  • 1.68e4
59.67
  • 59.67
  • 51.56
  • 51.01
  • 49.92
  • 48.20
  • 48.17
  • 47.77
  • 47.51
  • 47.32
  • 47.16
  • 45.95
  • 44.37
  • 44.05
  • 44.03
  • 43.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
  • 1.50e4
59.03
  • 59.03
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.23e4
  • 1.23e4
  • 1.36e4
  • 1.39e4
  • 1.40e4
58.66
  • 58.66
  • 54.42
  • 53.52
  • 53.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
53.47
  • 53.47
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.66e4
  • 1.66e4
44.50
  • 44.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000035819.

Cross-references

EnsemblENSDARG00000035819 (sirt3)
ZFINZDB-GENE-070112-1762 (sirt3)
EMBLBC129442, BX663604
Uniprot/SPTREMBLA1L2B7, A1L2B7_DANRE, B0S7D4, B0S7D4_DANRE

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