We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

D. rerio Gene: si:ch211-173p18.3 - ENSDARG00000035821 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035821
Namesi:ch211-173p18.3
Descriptionsi:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-173p18.2, znf261
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
414
  • 414
  • 854
  • 2.10e3
  • 2.31e3
  • 2.95e3
98.62
  • 98.62
  • 97.14
  • 92.98
  • 92.27
  • 90.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
605
  • 605
97.98
  • 97.98
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
645
  • 645
97.84
  • 97.84
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
755
  • 755
97.48
  • 97.48
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
95.98
  • 95.98
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.34e3
  • 1.34e3
  • 5.73e3
  • 5.90e3
  • 5.97e3
95.53
  • 95.53
  • 80.83
  • 80.25
  • 80.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.32
  • 94.32
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.75e3
  • 1.75e3
94.13
  • 94.13
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.06e3
  • 2.06e3
  • 2.90e3
  • 4.84e3
  • 6.31e3
  • 6.84e3
  • 7.02e3
93.12
  • 93.12
  • 90.29
  • 83.79
  • 78.87
  • 77.10
  • 76.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.09e3
  • 2.09e3
92.99
  • 92.99
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
2.16e3
  • 2.16e3
  • 2.19e3
  • 2.20e3
  • 2.84e3
  • 3.64e3
  • 6.50e3
  • 6.52e3
  • 6.54e3
  • 6.69e3
  • 7.89e3
92.77
  • 92.77
  • 92.68
  • 92.63
  • 90.50
  • 87.83
  • 78.23
  • 78.17
  • 78.11
  • 77.60
  • 73.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.24e3
  • 2.24e3
92.51
  • 92.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.28
  • 92.28
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.42e3
  • 2.42e3
91.91
  • 91.91
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.43e3
  • 2.43e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
  • 3.37e3
91.53
  • 91.53
  • 88.72
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.85
  • 90.85
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.76e3
  • 2.76e3
  • 4.29e3
90.76
  • 90.76
  • 85.62
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
90.54
  • 90.54
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.83e3
  • 2.83e3
  • 5.89e3
90.52
  • 90.52
  • 80.29
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.84e3
  • 2.84e3
  • 4.64e3
  • 6.85e3
90.49
  • 90.49
  • 84.47
  • 77.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
85.04
  • 85.04
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.61e3
  • 4.61e3
84.55
  • 84.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
84.38
  • 84.38
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
4.77e3
  • 4.77e3
  • 4.80e3
  • 4.81e3
  • 5.08e3
  • 5.14e3
  • 5.15e3
  • 5.62e3
  • 5.68e3
  • 5.84e3
  • 5.85e3
  • 5.91e3
  • 6.29e3
  • 7.18e3
  • 9.41e3
84.03
  • 84.03
  • 83.94
  • 83.89
  • 83.00
  • 82.78
  • 82.77
  • 81.18
  • 80.99
  • 80.46
  • 80.41
  • 80.23
  • 78.95
  • 75.96
  • 68.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.29
  • 83.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
82.99
  • 82.99
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.45e3
  • 5.45e3
81.77
  • 81.77
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.68e3
  • 6.68e3
  • 8.55e3
77.64
  • 77.64
  • 71.36
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
77.14
  • 77.14
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.00e3
  • 7.00e3
76.56
  • 76.56
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.54e3
  • 7.54e3
74.75
  • 74.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000035821.

Cross-references

EnsemblENSDARG00000035821 (si:ch211-173p18.3)
ZFINZDB-GENE-060503-672 (si:ch211-173p18.3)
EMBLBX510986
Uniprot/SPTREMBLF1R3K9, F1R3K9_DANRE, F6P1T9, F6P1T9_DANRE, I3ISR9, I3ISR9_DANRE

Do not show this banner again