D. rerio Gene: fuca1.1 - ENSDARG00000035890 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035890
Namefuca1.1
Descriptionfucosidase, alpha-L- 1, tissue, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7434]
OrganismDanio rerio (zebrafish)
Synonym(s)fuca1, fuca1 {eco:0000313|embl:aah66691.1,gn eco:0000313|ensembl:ensdarp00000052103}, wu:fj17c05
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
482
  • 482
98.39
  • 98.39
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
770
  • 770
  • 1.22e3
  • 1.42e3
  • 1.52e3
  • 1.81e3
  • 2.95e3
97.43
  • 97.43
  • 95.90
  • 95.26
  • 94.93
  • 93.96
  • 90.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
904
  • 904
96.98
  • 96.98
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.37e3
  • 1.37e3
  • 1.50e3
95.41
  • 95.41
  • 94.97
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
1.61e3
  • 1.61e3
  • 1.72e3
  • 1.80e3
  • 1.93e3
  • 1.99e3
  • 2.30e3
  • 3.04e3
  • 3.21e3
  • 3.22e3
  • 3.63e3
  • 3.76e3
  • 4.09e3
  • 4.61e3
  • 4.74e3
  • 1.31e4
  • 1.33e4
  • 1.45e4
  • 1.50e4
94.62
  • 94.62
  • 94.24
  • 93.98
  • 93.55
  • 93.34
  • 92.29
  • 89.81
  • 89.26
  • 89.22
  • 87.86
  • 87.42
  • 86.31
  • 84.56
  • 84.12
  • 56.27
  • 55.48
  • 51.51
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.65e3
  • 1.65e3
  • 1.71e3
  • 2.03e3
  • 2.03e3
  • 2.44e3
  • 2.53e3
  • 2.53e3
  • 3.44e3
  • 4.09e3
  • 7.03e3
94.47
  • 94.47
  • 94.28
  • 93.22
  • 93.20
  • 91.82
  • 91.53
  • 91.52
  • 88.49
  • 86.31
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.90
  • 92.90
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.15e3
  • 2.15e3
  • 2.16e3
  • 4.64e3
92.82
  • 92.82
  • 92.76
  • 84.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.24e3
  • 2.24e3
  • 3.21e3
  • 3.67e3
  • 5.69e3
  • 5.86e3
92.49
  • 92.49
  • 89.25
  • 87.72
  • 80.95
  • 80.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.30e3
  • 3.30e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
  • 1.02e4
88.15
  • 88.15
  • 65.85
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.03
  • 87.03
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.97e3
  • 3.97e3
  • 6.52e3
86.72
  • 86.72
  • 78.17
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.07e3
  • 4.07e3
86.36
  • 86.36
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.34e3
  • 4.34e3
85.48
  • 85.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.66
  • 83.66
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.42
  • 82.42
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.11
  • 80.11
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.98e3
  • 5.98e3
79.97
  • 79.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.58e3
  • 6.58e3
  • 1.44e4
77.97
  • 77.97
  • 51.84
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.59e3
  • 6.59e3
  • 9.98e3
77.93
  • 77.93
  • 66.58
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
6.97e3
  • 6.97e3
  • 6.97e3
  • 6.97e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.12e4
  • 1.14e4
  • 1.14e4
  • 1.23e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
76.66
  • 76.66
  • 76.66
  • 76.66
  • 66.65
  • 64.69
  • 64.69
  • 62.48
  • 61.75
  • 61.75
  • 58.80
  • 57.68
  • 57.13
  • 57.13
  • 57.13
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.11e3
  • 7.11e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.37
  • 74.37
AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
8.40e3
  • 8.40e3
  • 8.96e3
  • 8.96e3
  • 1.14e4
  • 1.16e4
  • 1.20e4
  • 1.20e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
71.86
  • 71.86
  • 69.99
  • 69.99
  • 61.75
  • 61.09
  • 59.98
  • 59.98
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.48e3
  • 8.48e3
71.60
  • 71.60
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.53e3
  • 8.53e3
  • 1.03e4
  • 1.05e4
71.43
  • 71.43
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.71e3
  • 8.71e3
  • 8.71e3
  • 1.07e4
70.82
  • 70.82
  • 70.82
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.18e3
  • 9.18e3
69.27
  • 69.27
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.41e3
  • 9.41e3
68.49
  • 68.49
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.62e3
  • 9.62e3
  • 9.98e3
  • 1.01e4
67.79
  • 67.79
  • 66.58
  • 66.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
9.71e3
  • 9.71e3
  • 9.96e3
  • 1.19e4
67.48
  • 67.48
  • 66.65
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.87e3
  • 9.87e3
66.94
  • 66.94
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.21e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
61.75
  • 61.75
  • 59.36
  • 57.47
  • 57.47
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
59.08
  • 59.08
  • 59.08
  • 58.32
  • 54.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000035890.

Cross-references

EnsemblENSDARG00000035890 (fuca1.1)
ZFINZDB-GENE-030131-7434 (fuca1.1)
EMBLBC066691, BX936306
Uniprot/SPTREMBLQ6NY93, Q6NY93_DANRE

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