D. rerio Gene: crabp1b - ENSDARG00000035904 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035904
Namecrabp1b
Descriptioncellular retinoic acid binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040624-3]
OrganismDanio rerio (zebrafish)
Synonym(s)crabp1l, crabpib
Orthologs(s)13 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.28e3
  • 2.28e3
  • 4.99e3
92.36
  • 92.36
  • 83.30
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
3.11e3
  • 3.11e3
  • 3.93e3
  • 4.47e3
  • 4.75e3
  • 7.02e3
89.59
  • 89.59
  • 86.84
  • 85.05
  • 84.11
  • 76.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.67e3
  • 6.67e3
77.66
  • 77.66
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.81e3
  • 6.81e3
77.20
  • 77.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.26
  • 74.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.13
  • 74.13
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.47e3
  • 9.47e3
68.30
  • 68.30
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
  • 1.22e4
66.90
  • 66.90
  • 59.16
AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.38
  • 63.38
AEIR
  • AEIR
UBERON:0005523rhombomere 7
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.43
  • 61.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
  • 1.37e4
60.00
  • 60.00
  • 54.13
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.29
  • 58.29
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.15
  • 57.15
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.36e4
57.11
  • 57.11
  • 55.24
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.30e4
  • 1.30e4
  • 1.34e4
56.49
  • 56.49
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.39e4
  • 1.39e4
53.48
  • 53.48
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.38
  • 50.38
AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0005519rhombomere 6
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.59e4
  • 1.59e4
46.70
  • 46.70
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
  • 2.10e4
44.89
  • 44.89
  • 29.68
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.15
  • 35.15
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.53
  • 32.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.50
  • 29.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Vertebrata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000035904.

Cross-references

EnsemblENSDARG00000035904 (crabp1b)
ZFINZDB-GENE-040624-3 (crabp1b)
EMBLAY616861, BC162180, BC162190, BX663612
Uniprot/SPTREMBLQ6IWJ1, Q6IWJ1_DANRE

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