D. rerio Gene: yars - ENSDARG00000035913 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035913
Nameyars
Descriptiontyrosyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030425-2]
OrganismDanio rerio (zebrafish)
Synonym(s)cb204, tyrrs, wu:fk52b08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
1.06e3
  • 1.06e3
  • 2.38e3
  • 2.85e3
  • 2.96e3
  • 3.16e3
  • 3.22e3
  • 3.26e3
  • 3.76e3
  • 4.63e3
  • 6.25e3
96.45
  • 96.45
  • 92.02
  • 90.46
  • 90.11
  • 89.41
  • 89.23
  • 89.08
  • 87.42
  • 84.51
  • 79.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.42
  • 95.42
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.62e3
  • 1.62e3
  • 6.78e3
94.58
  • 94.58
  • 77.30
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.66e3
  • 1.66e3
  • 3.11e3
  • 3.34e3
  • 4.98e3
  • 7.02e3
  • 7.61e3
94.43
  • 94.43
  • 89.58
  • 88.83
  • 83.33
  • 76.51
  • 74.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.79e3
  • 1.79e3
  • 2.65e3
  • 3.11e3
  • 4.62e3
  • 5.27e3
94.01
  • 94.01
  • 91.14
  • 89.60
  • 84.52
  • 82.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.89
  • 93.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.38e3
  • 2.38e3
92.02
  • 92.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
3.02e3
  • 3.02e3
  • 3.50e3
  • 3.65e3
  • 3.68e3
  • 3.84e3
  • 4.41e3
  • 4.43e3
  • 4.48e3
  • 4.55e3
  • 4.56e3
  • 4.94e3
  • 5.16e3
  • 6.22e3
  • 1.02e4
89.88
  • 89.88
  • 88.30
  • 87.79
  • 87.69
  • 87.13
  • 85.23
  • 85.18
  • 84.99
  • 84.78
  • 84.73
  • 83.47
  • 82.71
  • 79.16
  • 65.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
  • 4.38e3
89.78
  • 89.78
  • 85.35
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.39
  • 89.39
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.36
  • 89.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.22
  • 89.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.32
  • 88.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.16
  • 88.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
87.78
  • 87.78
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.22
  • 87.22
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.93
  • 86.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.92e3
  • 3.92e3
86.87
  • 86.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
  • 5.33e3
86.72
  • 86.72
  • 82.14
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.46
  • 86.46
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.07e3
  • 4.07e3
  • 4.98e3
86.36
  • 86.36
  • 83.33
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.27e3
  • 4.27e3
  • 4.27e3
  • 5.60e3
85.71
  • 85.71
  • 85.71
  • 81.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
4.27e3
  • 4.27e3
  • 4.98e3
  • 7.86e3
85.71
  • 85.71
  • 83.33
  • 73.67
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.55
  • 85.55
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.53e3
  • 4.53e3
84.84
  • 84.84
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
  • 5.27e3
  • 5.77e3
  • 6.50e3
  • 8.68e3
84.70
  • 84.70
  • 82.35
  • 80.69
  • 78.25
  • 70.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.57e3
  • 4.57e3
  • 5.39e3
  • 7.17e3
84.69
  • 84.69
  • 81.96
  • 75.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 5.60e3
83.33
  • 83.33
  • 81.24
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.50e3
  • 5.50e3
  • 5.98e3
81.57
  • 81.57
  • 79.99
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.60e3
  • 5.60e3
  • 5.60e3
81.24
  • 81.24
  • 81.24
AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 6.29e3
  • 6.29e3
79.99
  • 79.99
  • 78.94
  • 78.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.03e3
  • 6.03e3
79.80
  • 79.80
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.29e3
  • 6.29e3
  • 6.29e3
  • 6.40e3
  • 6.64e3
  • 6.64e3
78.94
  • 78.94
  • 78.94
  • 78.56
  • 77.77
  • 77.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.71e3
  • 8.79e3
  • 9.13e3
  • 9.19e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
  • 1.10e4
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 70.82
  • 70.57
  • 69.43
  • 69.22
  • 67.48
  • 66.66
  • 66.65
  • 66.65
  • 64.98
  • 64.69
  • 63.87
  • 63.87
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.48e3
  • 6.48e3
  • 7.31e3
78.31
  • 78.31
  • 75.51
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
6.50e3
  • 6.50e3
  • 1.19e4
78.23
  • 78.23
  • 60.31
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.64e3
  • 6.64e3
  • 6.64e3
  • 6.72e3
77.77
  • 77.77
  • 77.77
  • 77.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
6.93e3
  • 6.93e3
  • 1.21e4
  • 1.22e4
76.80
  • 76.80
  • 59.50
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.70
  • 76.70
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 7.03e3
  • 7.03e3
76.46
  • 76.46
  • 76.46
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.08e3
  • 7.08e3
  • 7.08e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
76.30
  • 76.30
  • 76.30
  • 72.48
  • 72.48
  • 71.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.10e3
  • 8.10e3
72.89
  • 72.89
AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.12e4
66.66
  • 66.66
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.20e4
61.09
  • 61.09
  • 61.09
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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