D. rerio Gene: ptprn2 - ENSDARG00000035970 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000035970
Nameptprn2
Descriptionprotein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
OrganismDanio rerio (zebrafish)
Synonym(s)fc52a08, ia-2[b], im:7153814, wu:fc52a08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
1.15e3
  • 1.15e3
  • 9.53e3
  • 1.49e4
96.14
  • 96.14
  • 68.10
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
  • 4.05e3
93.01
  • 93.01
  • 86.44
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
  • 6.43e3
  • 1.05e4
  • 1.53e4
92.26
  • 92.26
  • 78.48
  • 64.96
  • 48.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
2.74e3
  • 2.74e3
  • 6.64e3
  • 7.56e3
  • 7.60e3
  • 7.86e3
  • 8.75e3
  • 1.17e4
  • 1.27e4
  • 1.29e4
  • 1.29e4
90.81
  • 90.81
  • 77.78
  • 74.69
  • 74.57
  • 73.70
  • 70.70
  • 60.91
  • 57.64
  • 56.96
  • 56.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
  • 9.70e3
  • 9.85e3
  • 1.05e4
  • 1.14e4
  • 1.15e4
  • 1.16e4
  • 1.18e4
  • 1.22e4
  • 1.27e4
  • 1.30e4
  • 1.48e4
  • 1.49e4
85.86
  • 85.86
  • 67.54
  • 67.02
  • 64.98
  • 61.95
  • 61.45
  • 61.01
  • 60.46
  • 59.07
  • 57.35
  • 56.56
  • 50.61
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
6.57e3
  • 6.57e3
  • 7.47e3
  • 7.53e3
78.01
  • 78.01
  • 74.98
  • 74.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.89e3
  • 6.89e3
  • 8.54e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
76.92
  • 76.92
  • 71.41
  • 70.57
  • 70.57
  • 69.98
  • 69.43
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.06e4
  • 1.06e4
  • 1.69e4
  • 1.75e4
64.41
  • 64.41
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.33
  • 62.33
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
  • 1.31e4
57.12
  • 57.12
  • 56.23
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.30e4
  • 1.30e4
56.41
  • 56.41
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
  • 1.69e4
51.06
  • 51.06
  • 43.35
AEIR
  • AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.67e4
  • 1.67e4
44.04
  • 44.04
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.44
  • 39.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.52
  • 36.52
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.14
  • 36.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.97
  • 32.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
26.13
  • 26.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000035970 (ptprn2)
ZFINZDB-GENE-030131-3758 (ptprn2)
EMBLBX005327, BX248235
Uniprot/SPTREMBLA3KPJ4, A3KPJ4_DANRE, F1QIB8, F1QIB8_DANRE

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