Gene: mnx1 - ENSDARG00000035984 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000035984
Name	mnx1
Description	motor neuron and pancreas homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040409-1]
Organism	Danio rerio (zebrafish)
Synonym(s)	hb9, hlxb9, hlxb9gn, zgc:112174
Orthologs(s)	9 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
ZFA:0005177	VeLD (Danio)	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	2.13e3 2.13e3	92.86 92.86	AEIR AEIR
UBERON:0006859	swim bladder bud	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25	2.49e3 2.49e3 7.47e3	91.67 91.67 75.00	AEIR AEIR AEIR
UBERON:0003058	hypochord	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites ZFS:0000027Segmentation:20-25 somites	3.20e3 3.20e3 1.34e4 1.37e4	89.28 89.28 54.99 54.15	AEIR AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 3 stages UBERON:0000066fully formed stage ZFS:0000035Larval:Protruding-mouth ZFS:0000037Larval:Day 5	3.35e3 3.35e3 4.98e3 1.12e4	88.78 88.78 83.33 62.49	AEIR AEIR AEIR AEIR
CL:0000532	CAP motoneuron	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000028Segmentation:26+ somites	3.73e3 3.73e3 7.47e3 9.96e3 1.49e4 1.49e4	87.50 87.50 75.00 66.67 50.00 50.00	AEIR AEIR AEIR AEIR AEIR AEIR
ZFA:0005179	MiP motor neuron (Danio)	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites	3.73e3 3.73e3 9.96e3 1.49e4 1.49e4 1.49e4	87.50 87.50 66.67 50.00 50.00 50.00	AEIR AEIR AEIR AEIR AEIR AEIR
ZFA:0005180	RoP motor neuron (Danio)	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites	3.73e3 3.73e3 9.96e3 1.49e4 1.49e4 1.49e4	87.50 87.50 66.67 50.00 50.00 50.00	AEIR AEIR AEIR AEIR AEIR AEIR
ZFA:0005181	VaP motor neuron (Danio)	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000028Segmentation:26+ somites ZFS:0000026Segmentation:14-19 somites	4.98e3 4.98e3 9.96e3 1.49e4 1.49e4 1.49e4	83.34 83.34 66.67 50.00 50.00 50.00	AEIR AEIR AEIR AEIR AEIR AEIR
CL:0000100	motor neuron	[+] 3 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15	7.47e3 7.47e3 7.47e3 1.49e4	75.00 75.00 75.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0003923	dorsal pancreatic bud	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5	7.47e3 7.47e3 7.47e3 1.12e4	75.00 75.00 75.00 62.49	AEIR AEIR AEIR AEIR
ZFA:0005754	primary islet (Danio)	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:0003921	pancreas primordium	[+] 3 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites	8.30e3 8.30e3 1.15e4 1.49e4	72.22 72.22 61.53 49.98	AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	8.39e3 8.39e3	71.90 71.90	AEIR AEIR
UBERON:0000016	endocrine pancreas	[+] 1 stage ZFS:0000033Hatching:Long-pec	8.96e3 8.96e3	70.00 70.00	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	9.01e3 9.01e3 1.27e4	69.84 69.84 57.44	AEIR AEIR AEIR
UBERON:0005515	rhombomere 5	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25	9.96e3 9.96e3 1.49e4	66.67 66.67 50.00	AEIR AEIR AEIR
UBERON:0005519	rhombomere 6	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25	9.96e3 9.96e3 1.49e4	66.67 66.67 50.00	AEIR AEIR AEIR
UBERON:2007035	spinal cord neural rod	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	9.96e3 9.96e3	66.67 66.67	AEIR AEIR
UBERON:0002533	post-anal tail bud	[+] 2 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5	1.09e4 1.09e4 1.38e4	63.63 63.63 53.83	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5	1.10e4 1.10e4 1.12e4 1.15e4 1.44e4 1.46e4	63.23 63.23 62.53 61.66 51.66 50.95	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:2007042	spinal cord neural tube	[+] 2 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000026Segmentation:14-19 somites	1.12e4 1.12e4 1.49e4	62.50 62.50 49.99	AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.17e4 1.17e4 1.22e4 1.34e4 1.34e4	60.68 60.68 59.06 55.24 54.99	AEIR AEIR AEIR AEIR AEIR
UBERON:0002328	notochord	[+] 2 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000022Gastrula:Bud	1.20e4 1.20e4 1.24e4	59.98 59.98 58.33	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.22e4 1.22e4	59.08 59.08	AEIR AEIR
UBERON:0004880	chordamesoderm	[+] 1 stage ZFS:0000021Gastrula:90%-epiboly	1.26e4 1.26e4	57.68 57.68	AEIR AEIR
UBERON:0001264	pancreas	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.28e4 1.28e4	57.14 57.14	AEIR AEIR
CL:0000247	Rohon-Beard neuron	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.31e4 1.31e4	56.24 56.24	AEIR AEIR
UBERON:0002028	hindbrain	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.34e4 1.34e4	54.97 54.97	AEIR AEIR
CL:0000223	endodermal cell	[+] 2 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
CL:0000099	interneuron	[+] 2 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
ZFA:0001065	lateral mesoderm (Danio)	[+] 2 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites	1.49e4 1.49e4 1.49e4	50.00 50.00 49.99	AEIR AEIR AEIR
UBERON:0003922	pancreatic epithelial bud	[+] 2 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15	1.49e4 1.49e4 1.49e4	49.99 49.99 49.98	AEIR AEIR AEIR
UBERON:0001892	rhombomere	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4	49.98 49.98	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.65e4 1.65e4	44.68 44.68	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.66e4 1.66e4	44.54 44.54	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.73e4 1.73e4	42.23 42.23	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	9 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Rattus norvegicus (rat) Sus scrofa (pig) Monodelphis domestica (opossum) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	9 genes ENSG00000130675 MNX1 ENSMUSG00000001566 Mnx1 ENSPTRG00000019918 MNX1 ENSGGOG00000005374 MNX1 ENSRNOG00000046959 Mnx1 ENSSSCG00000016410 MNX1 ENSMODG00000005191 MNX1 ENSGALG00000006438 MNX1 ENSXETG00000021615 mnx1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000035984.

Cross-references

Ensembl	ENSDARG00000035984 (mnx1)
ZFIN	ZDB-GENE-040409-1 (mnx1)
EMBL	AY445044, BC093243, BX247878
Uniprot/SPTREMBL	Q6SYZ1, Q6SYZ1_DANRE