D. rerio Gene: exosc6 - ENSDARG00000036060 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036060
Nameexosc6
Descriptionexosome component 6 [Source:ZFIN;Acc:ZDB-GENE-050522-362]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd1130, mtr3, q503u8, wu:fe17d05, zgc:110071

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.74
  • 92.74
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
91.93
  • 91.93
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
2.59e3
  • 2.59e3
  • 3.42e3
  • 3.63e3
  • 4.54e3
  • 4.64e3
  • 5.37e3
91.34
  • 91.34
  • 88.55
  • 87.85
  • 84.81
  • 84.45
  • 82.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
  • 3.99e3
  • 7.11e3
90.59
  • 90.59
  • 86.64
  • 76.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.10e3
  • 3.10e3
89.63
  • 89.63
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.13e3
  • 3.13e3
89.53
  • 89.53
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.28e3
  • 3.28e3
  • 3.35e3
  • 3.47e3
  • 3.86e3
  • 4.40e3
  • 4.63e3
  • 4.84e3
  • 5.57e3
  • 1.04e4
  • 1.54e4
89.03
  • 89.03
  • 88.78
  • 88.40
  • 87.09
  • 85.28
  • 84.51
  • 83.79
  • 81.35
  • 65.33
  • 48.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.39e3
  • 3.39e3
88.66
  • 88.66
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
3.41e3
  • 3.41e3
  • 3.59e3
  • 3.66e3
  • 3.79e3
  • 3.94e3
  • 4.88e3
  • 4.98e3
  • 5.32e3
  • 5.71e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.90e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.88e3
  • 7.91e3
  • 8.52e3
  • 8.96e3
  • 8.96e3
  • 9.97e3
  • 1.11e4
  • 1.31e4
  • 1.42e4
  • 1.49e4
  • 1.49e4
88.58
  • 88.58
  • 87.97
  • 87.76
  • 87.32
  • 86.82
  • 83.65
  • 83.33
  • 82.19
  • 80.89
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.88
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.60
  • 73.52
  • 71.47
  • 69.99
  • 69.99
  • 66.61
  • 62.90
  • 56.08
  • 52.45
  • 50.20
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
3.77e3
  • 3.77e3
  • 4.06e3
  • 4.45e3
  • 4.73e3
  • 4.78e3
87.39
  • 87.39
  • 86.40
  • 85.09
  • 84.16
  • 84.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
  • 1.15e4
86.65
  • 86.65
  • 61.45
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.52
  • 85.52
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.54e3
  • 4.54e3
84.79
  • 84.79
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
  • 9.34e3
83.40
  • 83.40
  • 68.73
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.19
  • 83.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.18
  • 81.18
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.86
  • 79.86
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
78.34
  • 78.34
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.67e3
  • 6.67e3
77.65
  • 77.65
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.77e3
  • 6.77e3
  • 6.94e3
77.34
  • 77.34
  • 76.76
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.80e3
  • 7.80e3
  • 8.01e3
  • 1.01e4
73.88
  • 73.88
  • 73.19
  • 66.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.03e3
  • 8.03e3
  • 1.60e4
73.13
  • 73.13
  • 46.36
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.22e3
  • 8.22e3
72.47
  • 72.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
71.00
  • 71.00
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.46
  • 70.46
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.96
  • 65.96
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.61
  • 64.61
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.75
  • 63.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.36
  • 60.36
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.81
  • 56.81
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
  • 1.35e4
55.53
  • 55.53
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.02
  • 49.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC065602, BC095173, BC164622, CR352249
EnsemblENSDARG00000036060 (exosc6)
Uniprot/SPTREMBLB2GQ67, B2GQ67_DANRE
Uniprot/SWISSPROTEXOS6_DANRE, Q6P0I8
ZFINZDB-GENE-050522-362 (exosc6)

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