D. rerio Gene: gtf2h4 - ENSDARG00000036071 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036071
Namegtf2h4
Descriptiongeneral transcription factor IIH, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6779]
OrganismDanio rerio (zebrafish)
Synonym(s)p52, wu:fa04h09, zgc:77721
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.02e3
  • 2.02e3
93.25
  • 93.25
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.90e3
  • 2.90e3
90.29
  • 90.29
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.32e3
  • 3.32e3
  • 3.50e3
  • 3.80e3
  • 4.04e3
  • 4.76e3
  • 4.90e3
  • 5.03e3
  • 5.61e3
  • 7.62e3
  • 8.40e3
88.88
  • 88.88
  • 88.29
  • 87.26
  • 86.49
  • 84.07
  • 83.60
  • 83.16
  • 81.20
  • 74.49
  • 71.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.56e3
  • 3.56e3
  • 4.25e3
  • 4.81e3
  • 5.52e3
  • 5.58e3
  • 5.62e3
  • 6.02e3
  • 6.09e3
  • 6.47e3
  • 6.82e3
  • 6.85e3
  • 8.27e3
  • 8.85e3
  • 8.88e3
  • 9.43e3
  • 1.46e4
  • 1.47e4
  • 1.50e4
88.10
  • 88.10
  • 85.77
  • 83.91
  • 81.51
  • 81.31
  • 81.18
  • 79.84
  • 79.61
  • 78.35
  • 77.18
  • 77.08
  • 72.31
  • 70.36
  • 70.27
  • 68.42
  • 51.01
  • 50.68
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.96e3
  • 3.96e3
86.74
  • 86.74
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
3.97e3
  • 3.97e3
  • 5.18e3
  • 5.43e3
  • 5.46e3
  • 6.11e3
  • 8.25e3
86.70
  • 86.70
  • 82.66
  • 81.81
  • 81.72
  • 79.56
  • 72.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.05e3
  • 4.05e3
  • 5.07e3
  • 7.08e3
  • 8.86e3
86.45
  • 86.45
  • 83.03
  • 76.31
  • 70.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
4.06e3
  • 4.06e3
  • 5.34e3
  • 5.78e3
  • 5.82e3
  • 5.98e3
86.41
  • 86.41
  • 82.12
  • 80.64
  • 80.51
  • 79.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.17e3
  • 4.17e3
86.05
  • 86.05
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.87e3
  • 4.87e3
83.71
  • 83.71
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.93e3
  • 4.93e3
  • 9.26e3
83.50
  • 83.50
  • 69.00
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.28e3
  • 5.28e3
82.31
  • 82.31
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
81.09
  • 81.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.19e3
  • 6.19e3
79.29
  • 79.29
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
  • 8.67e3
78.93
  • 78.93
  • 70.98
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.47
  • 78.47
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.47
  • 77.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.07e3
  • 7.07e3
76.31
  • 76.31
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.27e3
  • 7.27e3
75.65
  • 75.65
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
  • 1.34e4
75.45
  • 75.45
  • 55.02
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.90
  • 74.90
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.70e3
  • 7.70e3
  • 7.97e3
  • 8.41e3
74.21
  • 74.21
  • 73.33
  • 71.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
  • 9.54e3
73.62
  • 73.62
  • 68.04
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.91e3
  • 7.91e3
73.52
  • 73.52
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.93e3
  • 7.93e3
  • 1.50e4
73.44
  • 73.44
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.26e3
  • 8.26e3
72.36
  • 72.36
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.27
  • 72.27
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.77e3
  • 8.77e3
70.64
  • 70.64
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.15
  • 65.15
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.03
  • 65.03
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.06e4
  • 1.06e4
64.39
  • 64.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036071.

Cross-references

EnsemblENSDARG00000036071 (gtf2h4)
ZFINZDB-GENE-030131-6779 (gtf2h4)
EMBLBX537309
Uniprot/SPTREMBLQ1LWR3, Q1LWR3_DANRE

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