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D. rerio Gene: tph1b - ENSDARG00000036082 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036082
Nametph1b
Descriptiontryptophan hydroxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030805-6]
OrganismDanio rerio (zebrafish)
Synonym(s)tph1-2, tph1l, tph2, tphd2, tphd2gn
Orthologs(s)6 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
6.38e3
  • 6.38e3
  • 8.45e3
  • 9.21e3
  • 9.37e3
  • 9.98e3
  • 1.14e4
78.63
  • 78.63
  • 71.69
  • 69.15
  • 68.64
  • 66.59
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
8.71e3
  • 8.71e3
  • 9.96e3
  • 1.08e4
70.82
  • 70.82
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
9.33e3
  • 9.33e3
  • 9.33e3
  • 1.07e4
  • 1.19e4
  • 1.19e4
  • 1.19e4
68.74
  • 68.74
  • 68.74
  • 64.28
  • 60.00
  • 60.00
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
9.49e3
  • 9.49e3
  • 1.01e4
  • 1.23e4
68.24
  • 68.24
  • 66.32
  • 58.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.02e4
  • 1.02e4
  • 1.07e4
  • 1.07e4
  • 1.10e4
  • 1.12e4
  • 1.13e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.52e4
  • 1.56e4
  • 1.57e4
  • 1.60e4
  • 1.66e4
65.87
  • 65.87
  • 64.31
  • 64.22
  • 63.32
  • 62.49
  • 62.29
  • 50.90
  • 50.25
  • 49.80
  • 49.44
  • 49.00
  • 47.80
  • 47.49
  • 46.56
  • 44.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
  • 1.15e4
  • 1.15e4
64.27
  • 64.27
  • 61.53
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.23e4
  • 1.23e4
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.35e4
  • 1.35e4
  • 1.41e4
  • 1.46e4
  • 1.53e4
  • 1.72e4
  • 1.98e4
  • 2.05e4
54.84
  • 54.84
  • 52.94
  • 51.05
  • 48.70
  • 42.47
  • 33.63
  • 31.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.77
  • 51.77
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.47e4
  • 1.47e4
50.70
  • 50.70
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.48e4
  • 1.48e4
50.52
  • 50.52
AEIR
  • AEIR
UBERON:0004684raphe nuclei
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000016Blastula:30%-epiboly
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.50e4
  • 1.50e4
  • 1.63e4
  • 1.66e4
49.61
  • 49.61
  • 45.49
  • 44.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.63
  • 48.63
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.56e4
  • 1.56e4
47.76
  • 47.76
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.74
  • 47.74
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.11
  • 46.11
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.37
  • 43.37
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
  • 1.91e4
42.06
  • 42.06
  • 35.93
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.82
  • 41.82
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
  • 2.09e4
41.74
  • 41.74
  • 29.86
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.20
  • 36.20
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.89
  • 35.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.47
  • 34.47
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.92
  • 33.92
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.88
  • 33.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria6 species6 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036082.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000036082.

Cross-references

EnsemblENSDARG00000036082 (tph1b)
ZFINZDB-GENE-030805-6 (tph1b)
EMBLAY616135, BC154120, BX571811
Uniprot/SPTREMBLQ6IWP4, Q6IWP4_DANRE

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