D. rerio Gene: smad3a - ENSDARG00000036096 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036096
Namesmad3a
DescriptionSMAD family member 3a [Source:ZFIN;Acc:ZDB-GENE-000509-3]
OrganismDanio rerio (zebrafish)
Synonym(s)madh3, madh3a, smad3, wu:fa99e03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
886
  • 886
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
967
  • 967
  • 1.24e3
  • 2.09e3
  • 3.17e3
96.76
  • 96.76
  • 95.87
  • 93.02
  • 89.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.26e3
  • 1.26e3
95.77
  • 95.77
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.31e3
  • 1.31e3
  • 1.39e4
95.63
  • 95.63
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
  • 2.06e3
94.45
  • 94.45
  • 93.12
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.68e3
  • 1.68e3
  • 7.61e3
  • 7.98e3
  • 8.01e3
  • 8.46e3
  • 8.75e3
  • 8.75e3
  • 8.81e3
  • 9.60e3
  • 1.02e4
94.38
  • 94.38
  • 74.51
  • 73.27
  • 73.18
  • 71.69
  • 70.72
  • 70.69
  • 70.50
  • 67.87
  • 65.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.51
  • 87.51
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.34e3
  • 4.34e3
85.46
  • 85.46
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.09e3
  • 5.09e3
  • 7.08e3
  • 9.49e3
82.95
  • 82.95
  • 76.29
  • 68.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
  • 8.63e3
82.69
  • 82.69
  • 71.10
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
5.57e3
  • 5.57e3
  • 5.80e3
  • 7.04e3
  • 7.07e3
  • 7.14e3
  • 7.27e3
  • 7.80e3
  • 8.00e3
  • 9.12e3
  • 1.19e4
  • 1.29e4
  • 1.33e4
  • 1.33e4
81.34
  • 81.34
  • 80.58
  • 76.43
  • 76.32
  • 76.09
  • 75.65
  • 73.90
  • 73.21
  • 69.46
  • 60.22
  • 56.70
  • 55.46
  • 55.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
  • 7.43e3
75.21
  • 75.21
  • 75.13
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.07
  • 75.07
AEIR
  • AEIR
UBERON:0002199integument
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
  • 8.07e3
75.00
  • 75.00
  • 72.97
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.85
  • 73.85
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.27
  • 73.27
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.29
  • 70.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.70e3
  • 9.70e3
67.51
  • 67.51
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.45
  • 66.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.20
  • 66.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.07e4
  • 1.07e4
64.22
  • 64.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.22
  • 64.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.53
  • 62.53
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.17e4
  • 1.17e4
  • 1.23e4
  • 1.45e4
  • 1.64e4
60.66
  • 60.66
  • 58.65
  • 51.44
  • 45.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
1.19e4
  • 1.19e4
  • 1.21e4
  • 1.27e4
  • 1.40e4
  • 1.69e4
60.15
  • 60.15
  • 59.41
  • 57.47
  • 53.13
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.61
  • 58.61
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.53
  • 58.53
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.47
  • 58.47
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

Do not show this banner again