D. rerio Gene: nudcd1 - ENSDARG00000036158 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036158
Namenudcd1
DescriptionNudC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050522-483]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6901299, im:6912119, wu:fc11c02, zgc:110705

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.25e3
  • 2.25e3
  • 1.47e4
92.46
  • 92.46
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.19
  • 88.19
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.07
  • 87.07
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.98e3
  • 6.22e3
  • 6.40e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.22e3
  • 8.30e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 84.61
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 79.99
  • 79.16
  • 78.57
  • 76.66
  • 76.46
  • 76.46
  • 76.18
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 72.48
  • 72.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
4.73e3
  • 4.73e3
  • 5.11e3
  • 5.49e3
  • 5.90e3
  • 5.97e3
84.15
  • 84.15
  • 82.89
  • 81.61
  • 80.24
  • 80.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.22
  • 81.22
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.19
  • 81.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
80.64
  • 80.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
80.05
  • 80.05
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.71e3
  • 6.71e3
77.52
  • 77.52
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
7.14e3
  • 7.14e3
  • 8.07e3
  • 8.17e3
76.10
  • 76.10
  • 73.00
  • 72.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.20e3
  • 7.20e3
  • 7.67e3
  • 8.37e3
  • 8.67e3
  • 9.08e3
  • 9.30e3
  • 9.46e3
  • 9.82e3
  • 1.12e4
  • 1.26e4
75.90
  • 75.90
  • 74.32
  • 71.98
  • 70.98
  • 69.58
  • 68.87
  • 68.31
  • 67.10
  • 62.36
  • 57.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
75.46
  • 75.46
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.33e3
  • 7.33e3
75.45
  • 75.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
75.08
  • 75.08
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.01
  • 74.01
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.80e3
  • 7.80e3
73.90
  • 73.90
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.01e3
  • 8.01e3
73.17
  • 73.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
8.29e3
  • 8.29e3
  • 8.43e3
  • 8.87e3
  • 1.12e4
  • 1.20e4
  • 1.20e4
72.23
  • 72.23
  • 71.77
  • 70.32
  • 62.52
  • 59.92
  • 59.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
8.48e3
  • 8.48e3
  • 9.44e3
  • 9.62e3
  • 9.84e3
  • 9.87e3
  • 9.99e3
  • 1.00e4
  • 1.01e4
  • 1.01e4
  • 1.03e4
  • 1.04e4
  • 1.09e4
  • 1.11e4
  • 1.13e4
  • 1.34e4
  • 1.50e4
  • 1.50e4
71.61
  • 71.61
  • 68.39
  • 67.78
  • 67.05
  • 66.94
  • 66.53
  • 66.47
  • 66.26
  • 66.18
  • 65.37
  • 65.22
  • 63.40
  • 62.92
  • 62.14
  • 55.06
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.56e3
  • 8.56e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
  • 9.46e3
71.31
  • 71.31
  • 68.33
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
  • 9.53e3
70.55
  • 70.55
  • 68.10
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.83e3
  • 8.83e3
70.42
  • 70.42
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.71e3
  • 9.71e3
67.48
  • 67.48
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.73e3
  • 9.73e3
67.41
  • 67.41
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.94e3
  • 9.94e3
  • 1.07e4
  • 1.28e4
66.73
  • 66.73
  • 64.12
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.15
  • 66.15
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.67
  • 65.67
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
  • 1.07e4
64.90
  • 64.90
  • 64.27
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.37e4
64.28
  • 64.28
  • 54.22
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.84
  • 60.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX511206
EnsemblENSDARG00000036158 (nudcd1)
Uniprot/SPTREMBLA8E7L6, A8E7L6_DANRE
ZFINZDB-GENE-050522-483 (nudcd1)

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