D. rerio Gene: pitx2 - ENSDARG00000036194 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036194
Namepitx2
Descriptionpaired-like homeodomain 2 [Source:ZFIN;Acc:ZDB-GENE-990714-27]
OrganismDanio rerio (zebrafish)
Synonym(s)pitx2a, pitx2b, pitx2c, q568c4, q9w5z1, zgc:110508, zpitx2c

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.38e3
  • 1.38e3
  • 9.96e3
  • 1.10e4
  • 1.24e4
  • 1.28e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
95.40
  • 95.40
  • 66.67
  • 63.32
  • 58.33
  • 57.14
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.36e3
  • 2.36e3
92.10
  • 92.10
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
3.25e3
  • 3.25e3
  • 7.47e3
  • 9.96e3
  • 1.25e4
  • 1.31e4
  • 1.33e4
  • 1.42e4
89.13
  • 89.13
  • 75.00
  • 66.67
  • 58.31
  • 56.22
  • 55.53
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.37e3
  • 3.37e3
  • 5.37e3
88.71
  • 88.71
  • 82.03
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.72e3
  • 3.72e3
  • 8.82e3
87.55
  • 87.55
  • 70.48
AEIR
  • AEIR
  • AEIR
UBERON:0003351pharyngeal epithelium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
3.73e3
  • 3.73e3
  • 7.47e3
87.50
  • 87.50
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.73e3
  • 3.73e3
  • 4.27e3
  • 4.98e3
  • 7.47e3
87.50
  • 87.50
  • 85.71
  • 83.34
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
4.04e3
  • 4.04e3
  • 4.71e3
  • 5.16e3
  • 5.27e3
  • 6.03e3
86.47
  • 86.47
  • 84.24
  • 82.74
  • 82.37
  • 79.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004017periocular mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
  • 1.63e4
82.33
  • 82.33
  • 45.52
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
5.95e3
  • 5.95e3
  • 8.15e3
  • 8.96e3
  • 1.19e4
  • 1.19e4
  • 1.22e4
  • 1.31e4
80.07
  • 80.07
  • 72.72
  • 69.99
  • 60.00
  • 59.99
  • 59.08
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
5.97e3
  • 5.97e3
  • 1.07e4
  • 1.07e4
  • 1.07e4
  • 1.19e4
80.00
  • 80.00
  • 64.28
  • 64.28
  • 64.28
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000020Gastrula:75%-epiboly
6.22e3
  • 6.22e3
  • 6.97e3
  • 7.97e3
  • 9.13e3
79.16
  • 79.16
  • 76.66
  • 73.32
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.33e3
  • 6.33e3
  • 6.48e3
78.79
  • 78.79
  • 78.30
AEIR
  • AEIR
  • AEIR
UBERON:0000165mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0004707pharyngula stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.10e4
  • 1.25e4
  • 1.28e4
  • 1.31e4
75.00
  • 75.00
  • 75.00
  • 63.32
  • 58.31
  • 57.12
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003843dental epithelium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0009122adenohypophyseal placode
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.12e4
  • 1.28e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 62.50
  • 57.14
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009910posterior lateral plate mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000711DEL
  • ZFS:0000017Gastrula:50%-epiboly
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
ZFA:0005491optic furrow (Danio)
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005087tooth placode
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.22e4
  • 1.33e4
  • 1.40e4
75.00
  • 75.00
  • 59.08
  • 55.53
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
73.40
  • 73.40
AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 1.19e4
  • 1.49e4
70.00
  • 70.00
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000027Segmentation:20-25 somites
9.19e3
  • 9.19e3
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.40e3
  • 9.40e3
68.53
  • 68.53
AEIR
  • AEIR
UBERON:0001899epithalamus
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 9.96e3
66.67
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0002424oral epithelium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.39e4
66.65
  • 66.65
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 1.20e4
  • 1.24e4
  • 1.33e4
66.65
  • 66.65
  • 59.98
  • 58.33
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
66.22
  • 66.22
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:2001143tooth 4V
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000016Blastula:30%-epiboly
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.43
  • 61.43
AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.17e4
  • 1.17e4
  • 1.39e4
60.70
  • 60.70
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
1.20e4
  • 1.20e4
  • 1.49e4
59.98
  • 59.98
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000028Segmentation:26+ somites
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.25e4
  • 1.25e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000027Segmentation:20-25 somites
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
1.33e4
  • 1.33e4
  • 1.34e4
  • 1.41e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
55.53
  • 55.53
  • 55.24
  • 52.92
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000034Hatching:Pec-fin
1.34e4
  • 1.34e4
  • 1.42e4
  • 1.42e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
55.24
  • 55.24
  • 52.60
  • 52.60
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
  • 1.42e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
54.97
  • 54.97
  • 52.60
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.36e4
  • 1.36e4
  • 1.38e4
54.53
  • 54.53
  • 53.83
AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000031Pharyngula:Prim-25
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
53.31
  • 53.31
  • 53.31
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000167oral cavity
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000930stomodeum
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001772corneal epithelium
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001801anterior segment of eyeball
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005497non-neural ectoderm
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009881anterior lateral plate mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005040posterior lateral mesoderm (Danio)
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005463oral ectoderm (Danio)
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0005571ventral canal eye (Danio)
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.81e4
49.92
  • 49.92
  • 39.25
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.47
  • 45.47
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.03
  • 42.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.89
  • 41.89
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.27
  • 39.27
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.18e4
  • 2.18e4
27.07
  • 27.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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