D. rerio Gene: gatm - ENSDARG00000036239 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036239
Namegatm
Descriptionglycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
OrganismDanio rerio (zebrafish)
Synonym(s)agat, cb409, wu:fa08a06, zgc:65855
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
223
  • 223
  • 229
  • 293
  • 303
  • 315
  • 332
  • 350
  • 351
  • 723
  • 915
99.26
  • 99.26
  • 99.24
  • 99.02
  • 98.99
  • 98.95
  • 98.89
  • 98.83
  • 98.83
  • 97.58
  • 96.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
438
  • 438
  • 441
  • 474
  • 531
  • 572
  • 596
  • 794
  • 1.21e3
  • 1.29e3
  • 2.10e3
  • 2.99e3
  • 3.06e3
  • 1.01e4
98.54
  • 98.54
  • 98.53
  • 98.42
  • 98.22
  • 98.09
  • 98.01
  • 97.34
  • 95.95
  • 95.67
  • 92.97
  • 89.98
  • 89.75
  • 66.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
555
  • 555
  • 578
  • 690
98.14
  • 98.14
  • 98.07
  • 97.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
584
  • 584
  • 2.71e3
  • 3.73e3
  • 5.77e3
  • 7.04e3
  • 7.48e3
98.05
  • 98.05
  • 90.91
  • 87.51
  • 80.68
  • 76.44
  • 74.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
  • 9.09e3
94.09
  • 94.09
  • 69.56
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.45
  • 93.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.08
  • 91.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.30e3
  • 3.30e3
  • 9.34e3
  • 1.12e4
  • 1.17e4
  • 1.21e4
  • 1.31e4
88.96
  • 88.96
  • 68.74
  • 62.49
  • 60.70
  • 59.50
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.32
  • 86.32
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
84.77
  • 84.77
AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
  • 7.47e3
  • 9.96e3
  • 1.06e4
83.34
  • 83.34
  • 75.00
  • 66.66
  • 64.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
5.53e3
  • 5.53e3
  • 1.31e4
  • 1.34e4
81.48
  • 81.48
  • 56.22
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.90e3
  • 5.90e3
80.25
  • 80.25
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.25e3
  • 6.25e3
79.07
  • 79.07
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
  • 8.52e3
78.95
  • 78.95
  • 71.46
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
6.97e3
  • 6.97e3
  • 8.96e3
  • 8.96e3
  • 1.10e4
  • 1.14e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
  • 1.32e4
76.66
  • 76.66
  • 69.99
  • 69.99
  • 63.32
  • 61.75
  • 58.80
  • 58.80
  • 58.80
  • 57.14
  • 57.13
  • 57.13
  • 56.23
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 8.30e3
  • 1.07e4
75.00
  • 75.00
  • 72.22
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.76e3
  • 7.76e3
74.03
  • 74.03
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
71.63
  • 71.63
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.10e3
  • 9.10e3
69.52
  • 69.52
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
9.17e3
  • 9.17e3
  • 9.96e3
  • 1.17e4
69.31
  • 69.31
  • 66.64
  • 60.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
  • 1.04e4
68.82
  • 68.82
  • 65.33
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
  • 1.16e4
65.37
  • 65.37
  • 64.26
  • 62.48
  • 61.75
  • 61.09
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.06e4
  • 1.06e4
  • 1.25e4
64.56
  • 64.56
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.77
  • 63.77
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
59.70
  • 59.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.07
  • 58.07
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
  • 1.36e4
54.53
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.21
  • 54.21
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.68
  • 50.68
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.53
  • 48.53
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.53
  • 48.53
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.88
  • 23.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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