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D. rerio Gene: lamc1 - ENSDARG00000036279 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036279
Namelamc1
Descriptionlaminin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-021226-3]
OrganismDanio rerio (zebrafish)
Synonym(s)q8jhv8, shortstop, shp, sleepy, sly
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
480
  • 480
98.40
  • 98.40
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
565
  • 565
  • 2.40e3
98.11
  • 98.11
  • 91.96
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000011Blastula:1k-cell
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
574
  • 574
  • 590
  • 694
  • 1.00e3
  • 1.05e3
  • 1.14e3
  • 1.14e3
  • 1.39e3
  • 1.52e3
  • 1.54e3
  • 1.61e3
  • 2.65e3
  • 2.69e3
  • 3.92e3
  • 6.79e3
  • 1.35e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
98.08
  • 98.08
  • 98.03
  • 97.68
  • 96.65
  • 96.47
  • 96.20
  • 96.17
  • 95.36
  • 94.92
  • 94.84
  • 94.62
  • 91.14
  • 91.01
  • 86.89
  • 77.27
  • 54.83
  • 50.25
  • 50.20
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
677
  • 677
97.73
  • 97.73
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
692
  • 692
97.69
  • 97.69
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
928
  • 928
  • 1.14e3
  • 1.59e3
  • 1.68e3
  • 2.32e3
  • 3.94e3
96.90
  • 96.90
  • 96.17
  • 94.69
  • 94.38
  • 92.22
  • 86.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
966
  • 966
  • 1.39e4
96.77
  • 96.77
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
  • 3.98e3
96.62
  • 96.62
  • 86.68
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
1.01e3
  • 1.01e3
  • 1.18e3
  • 1.40e3
  • 1.44e3
  • 1.65e3
  • 1.79e3
  • 1.89e3
  • 2.33e3
  • 4.39e3
  • 4.55e3
96.61
  • 96.61
  • 96.07
  • 95.32
  • 95.19
  • 94.47
  • 94.00
  • 93.68
  • 92.21
  • 85.29
  • 84.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.38e3
  • 1.38e3
  • 1.24e4
  • 1.29e4
95.40
  • 95.40
  • 58.33
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.18
  • 93.18
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
92.82
  • 92.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.67
  • 92.67
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.21e3
  • 2.21e3
  • 2.29e3
  • 3.01e3
92.59
  • 92.59
  • 92.33
  • 89.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
91.32
  • 91.32
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.09e3
  • 3.09e3
  • 3.59e3
  • 4.08e3
  • 5.82e3
  • 6.47e3
89.64
  • 89.64
  • 87.97
  • 86.34
  • 80.53
  • 78.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.69e3
  • 3.69e3
87.66
  • 87.66
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
4.00e3
  • 4.00e3
  • 1.12e4
  • 1.23e4
86.60
  • 86.60
  • 62.50
  • 58.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.11e3
  • 4.11e3
86.23
  • 86.23
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
4.74e3
  • 4.74e3
  • 1.21e4
  • 1.22e4
  • 1.34e4
  • 1.36e4
84.14
  • 84.14
  • 59.50
  • 59.08
  • 54.99
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 1.03e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
83.33
  • 83.33
  • 83.33
  • 83.33
  • 65.37
  • 64.69
  • 64.27
  • 64.27
  • 64.27
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.21e3
  • 5.21e3
  • 7.22e3
  • 1.06e4
  • 1.19e4
82.54
  • 82.54
  • 75.84
  • 64.45
  • 60.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.73e3
  • 5.73e3
80.81
  • 80.81
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.51
  • 80.51
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.32
  • 80.32
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.71
  • 79.71
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
6.97e3
  • 6.97e3
  • 7.47e3
  • 1.07e4
  • 1.10e4
76.66
  • 76.66
  • 74.99
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.17e3
  • 7.17e3
  • 8.96e3
  • 9.51e3
  • 9.51e3
  • 1.05e4
  • 1.12e4
  • 1.31e4
  • 1.34e4
75.98
  • 75.98
  • 69.98
  • 68.16
  • 68.16
  • 64.99
  • 62.50
  • 56.23
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000043Juvenile:Days 45-89
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
CL:0000190fast muscle cell
  • ZFS:0000043Juvenile:Days 45-89
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000043Juvenile:Days 45-89
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.91e3
  • 7.91e3
  • 8.79e3
  • 1.12e4
  • 1.12e4
  • 1.14e4
  • 1.14e4
  • 1.21e4
73.52
  • 73.52
  • 70.57
  • 62.48
  • 62.48
  • 61.88
  • 61.75
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.04e3
  • 8.04e3
  • 9.34e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
73.07
  • 73.07
  • 68.74
  • 67.85
  • 67.85
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.76
  • 71.76
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
8.79e3
  • 8.79e3
  • 9.13e3
  • 9.34e3
  • 9.96e3
70.57
  • 70.57
  • 69.43
  • 68.74
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.34e3
  • 9.60e3
  • 1.05e4
  • 1.08e4
  • 1.14e4
69.99
  • 69.99
  • 69.43
  • 68.74
  • 67.85
  • 64.98
  • 63.87
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.80e3
  • 9.80e3
67.20
  • 67.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.64
  • 66.64
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.04e4
  • 1.04e4
  • 1.05e4
  • 1.07e4
  • 1.12e4
  • 1.14e4
  • 1.15e4
  • 1.28e4
  • 1.34e4
65.19
  • 65.19
  • 64.97
  • 64.28
  • 62.48
  • 61.88
  • 61.34
  • 57.14
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.33e4
  • 1.38e4
62.50
  • 62.50
  • 55.55
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.34e4
57.11
  • 57.11
  • 55.24
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.05
  • 57.05
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.34e4
54.99
  • 54.99
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000028Segmentation:26+ somites
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:2001089myoseptum
  • ZFS:0000043Juvenile:Days 45-89
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003901horizontal septum
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001069ventral fin fold
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005424presumptive retinal pigmented epithelium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036279.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000036279.

Cross-references

EnsemblENSDARG00000036279 (lamc1)
ZFINZDB-GENE-021226-3 (lamc1)
EMBLAF468048, BX571812, BX681417
Uniprot/SWISSPROTLAMC1_DANRE, Q1LVF0

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