D. rerio Gene: nucb2a - ENSDARG00000036299 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036299
Namenucb2a
Descriptionnucleobindin 2a [Source:ZFIN;Acc:ZDB-GENE-030826-14]
OrganismDanio rerio (zebrafish)
Synonym(s)cb638, nucb2, wu:fa03d10
Orthologs(s)20 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
526
  • 526
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
527
  • 527
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
783
  • 783
  • 1.06e3
  • 1.36e3
  • 1.67e3
  • 1.93e3
97.38
  • 97.38
  • 96.46
  • 95.45
  • 94.42
  • 93.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
957
  • 957
96.80
  • 96.80
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.12e3
  • 1.12e3
  • 1.65e3
96.25
  • 96.25
  • 94.48
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.38e3
  • 1.38e3
  • 1.50e3
  • 1.21e4
95.39
  • 95.39
  • 94.99
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.88e3
  • 1.88e3
93.72
  • 93.72
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.90e3
  • 1.90e3
  • 2.00e3
93.63
  • 93.63
  • 93.32
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.63
  • 93.63
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.01e3
  • 2.01e3
93.27
  • 93.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.30
  • 92.30
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.55e3
  • 2.55e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.66e3
  • 2.66e3
  • 1.45e4
91.08
  • 91.08
  • 51.33
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.73e3
  • 2.73e3
  • 8.85e3
90.86
  • 90.86
  • 70.38
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.84e3
  • 2.84e3
90.50
  • 90.50
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
2.84e3
  • 2.84e3
  • 9.13e3
  • 1.22e4
  • 1.30e4
  • 1.39e4
  • 1.46e4
  • 1.50e4
90.48
  • 90.48
  • 69.43
  • 59.06
  • 56.38
  • 53.30
  • 51.01
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.70
  • 86.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.83
  • 84.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.62e3
  • 4.62e3
84.52
  • 84.52
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.91e3
  • 4.91e3
83.56
  • 83.56
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.81e3
  • 5.81e3
  • 5.81e3
  • 6.72e3
80.55
  • 80.55
  • 80.55
  • 77.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
5.97e3
  • 5.97e3
  • 6.40e3
  • 6.40e3
80.00
  • 80.00
  • 78.57
  • 78.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000026Segmentation:14-19 somites
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 9.51e3
  • 9.96e3
  • 1.03e4
79.99
  • 79.99
  • 68.17
  • 66.66
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.09e3
  • 9.79e3
74.99
  • 74.99
  • 74.99
  • 72.90
  • 67.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
8.97e3
  • 8.97e3
69.98
  • 69.98
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.34e3
  • 9.34e3
  • 9.67e3
  • 9.67e3
  • 1.23e4
  • 1.23e4
68.74
  • 68.74
  • 67.63
  • 67.63
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.07e4
  • 1.07e4
66.65
  • 66.65
  • 64.27
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.96
  • 61.96
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.28e4
  • 1.29e4
61.88
  • 61.88
  • 59.98
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.14e4
  • 1.14e4
  • 1.22e4
61.82
  • 61.82
  • 59.00
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.36
  • 58.36
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.91
  • 49.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036299.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000036299.

Cross-references

EnsemblENSDARG00000036299 (nucb2a)
ZFINZDB-GENE-030826-14 (nucb2a)
EMBLBX927397
Uniprot/SPTREMBLF1QW82, F1QW82_DANRE

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