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D. rerio Gene: tmtops3a - ENSDARG00000036460 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036460
Nametmtops3a
Descriptionteleost multiple tissue opsin 3a [Source:ZFIN;Acc:ZDB-GENE-130828-1]
OrganismDanio rerio (zebrafish)
Synonym(s)tmt2b
Orthologs(s)1 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.75
  • 48.75
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.76e4
  • 1.76e4
41.02
  • 41.02
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
2.25e4
  • 2.25e4
  • 2.25e4
  • 2.31e4
  • 2.35e4
24.60
  • 24.60
  • 24.56
  • 22.65
  • 21.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000036460.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Bilateria11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000036460.

Cross-references

EnsemblENSDARG00000036460 (tmtops3a)
ZFINZDB-GENE-130828-1 (tmtops3a)
Uniprot/SPTREMBLF1QPE1, F1QPE1_DANRE

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