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D. rerio Gene: rab39bb - ENSDARG00000036501 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036501
Namerab39bb
DescriptionRAB39B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-061215-104]
OrganismDanio rerio (zebrafish)
Synonym(s)rab39b, rab39b {eco:0000313|embl:aai28659.1,gn eco:0000313|ensembl:ensdarp00000092180}, zgc:153068
Orthologs(s)22 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.71
  • 90.71
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
  • 1.05e4
83.98
  • 83.98
  • 64.75
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.00e3
  • 6.00e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
7.70e3
  • 7.70e3
  • 8.98e3
  • 1.33e4
  • 1.36e4
  • 1.44e4
74.21
  • 74.21
  • 69.93
  • 55.54
  • 54.53
  • 51.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.67e3
  • 8.67e3
  • 1.05e4
70.96
  • 70.96
  • 64.94
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.95e3
  • 9.95e3
66.70
  • 66.70
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.60
  • 61.60
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.43e4
  • 1.43e4
52.10
  • 52.10
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.64e4
  • 1.64e4
  • 1.70e4
45.25
  • 45.25
  • 42.94
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.59
  • 40.59
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.01e4
  • 2.01e4
32.59
  • 32.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.09
  • 31.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.35
  • 29.35
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.15
  • 29.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036501.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Deuterostomia2 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000036501.

Cross-references

EnsemblENSDARG00000036501 (rab39bb)
ZFINZDB-GENE-061215-104 (rab39bb)
EMBLAL954129, BC128658, BC164823
Uniprot/SPTREMBLA1A5H9, A1A5H9_DANRE

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