D. rerio Gene: col18a1 - ENSDARG00000036558 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036558
Namecol18a1
Descriptioncollagen type XVIII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030516-3]
OrganismDanio rerio (zebrafish)
Synonym(s)cb371, cb529, fc96d06, sb:cb529, wu:fb47h10, wu:fb77g12, wu:fc50f04, wu:fc96d06, wu:fk02h12
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
297
  • 297
  • 1.99e3
99.01
  • 99.01
  • 93.36
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
659
  • 659
97.80
  • 97.80
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
679
  • 679
  • 747
  • 5.85e3
  • 6.98e3
  • 7.12e3
  • 7.47e3
  • 7.86e3
97.73
  • 97.73
  • 97.50
  • 80.42
  • 76.65
  • 76.18
  • 74.99
  • 73.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
880
  • 880
  • 949
  • 1.06e3
  • 1.09e3
  • 1.20e3
  • 1.40e3
  • 1.42e3
  • 1.80e3
  • 2.16e3
  • 3.43e3
97.06
  • 97.06
  • 96.83
  • 96.45
  • 96.35
  • 95.97
  • 95.30
  • 95.24
  • 93.97
  • 92.78
  • 88.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
934
  • 934
  • 934
  • 3.32e3
  • 4.48e3
  • 5.23e3
  • 5.50e3
  • 1.32e4
96.88
  • 96.88
  • 96.88
  • 88.89
  • 84.99
  • 82.49
  • 81.57
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
  • 4.55e3
96.58
  • 96.58
  • 84.77
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.13e3
  • 1.13e3
  • 1.13e3
  • 1.22e3
  • 1.29e3
  • 1.44e3
  • 1.80e3
  • 2.29e3
  • 2.83e3
  • 4.68e3
  • 7.20e3
  • 1.06e4
  • 1.10e4
  • 1.11e4
  • 1.16e4
96.24
  • 96.24
  • 96.21
  • 95.91
  • 95.67
  • 95.19
  • 93.99
  • 92.34
  • 90.51
  • 84.33
  • 75.91
  • 64.54
  • 63.15
  • 62.86
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.30e3
  • 1.30e3
  • 1.36e3
  • 8.30e3
  • 9.34e3
  • 9.44e3
  • 9.75e3
95.65
  • 95.65
  • 95.45
  • 72.21
  • 68.73
  • 68.40
  • 67.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.32e3
  • 1.32e3
  • 7.73e3
95.59
  • 95.59
  • 74.12
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.37e3
  • 1.37e3
  • 1.51e3
  • 2.13e3
95.42
  • 95.42
  • 94.96
  • 92.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.66e3
  • 1.66e3
  • 1.87e3
94.45
  • 94.45
  • 93.75
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.66e3
  • 1.66e3
94.44
  • 94.44
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
  • 8.96e3
  • 1.22e4
92.22
  • 92.22
  • 70.00
  • 59.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
2.49e3
  • 2.49e3
  • 2.64e3
  • 4.27e3
  • 8.30e3
  • 8.40e3
  • 9.71e3
  • 1.10e4
  • 1.17e4
91.67
  • 91.67
  • 91.17
  • 85.71
  • 72.21
  • 71.86
  • 67.48
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
2.80e3
  • 2.80e3
  • 2.80e3
  • 7.86e3
  • 7.86e3
90.62
  • 90.62
  • 90.62
  • 73.67
  • 73.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
3.20e3
  • 3.20e3
  • 3.45e3
  • 1.12e4
  • 1.19e4
  • 1.49e4
89.28
  • 89.28
  • 88.46
  • 62.50
  • 59.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.52e3
  • 3.52e3
  • 3.73e3
  • 4.98e3
  • 5.23e3
  • 5.23e3
  • 9.67e3
  • 1.23e4
88.23
  • 88.23
  • 87.50
  • 83.32
  • 82.49
  • 82.49
  • 67.63
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
4.08e3
  • 4.08e3
  • 4.08e3
  • 5.87e3
  • 5.98e3
  • 5.98e3
  • 1.34e4
86.36
  • 86.36
  • 86.36
  • 80.34
  • 79.99
  • 79.99
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.27e3
  • 4.27e3
  • 4.27e3
85.71
  • 85.71
  • 85.71
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.39e3
  • 4.39e3
  • 4.39e3
85.29
  • 85.29
  • 85.29
AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.39e3
  • 4.39e3
  • 4.98e3
  • 4.98e3
  • 9.13e3
  • 1.03e4
  • 1.10e4
  • 1.10e4
85.29
  • 85.29
  • 83.33
  • 83.33
  • 69.43
  • 65.61
  • 63.32
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.43e3
  • 4.43e3
85.17
  • 85.17
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.72e3
  • 4.72e3
  • 8.65e3
  • 9.13e3
  • 9.34e3
84.20
  • 84.20
  • 71.04
  • 69.43
  • 68.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.23e3
  • 5.23e3
  • 5.85e3
  • 5.98e3
  • 5.98e3
82.49
  • 82.49
  • 80.42
  • 79.99
  • 79.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
81.12
  • 81.12
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.65e3
  • 5.65e3
  • 8.64e3
81.08
  • 81.08
  • 71.08
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
5.66e3
  • 5.66e3
  • 1.18e4
  • 1.23e4
  • 1.30e4
  • 1.34e4
  • 1.35e4
81.07
  • 81.07
  • 60.59
  • 58.70
  • 56.55
  • 55.01
  • 54.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
6.04e3
  • 6.04e3
  • 8.15e3
  • 1.24e4
  • 1.39e4
79.78
  • 79.78
  • 72.70
  • 58.57
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.49e3
  • 6.49e3
78.26
  • 78.26
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.64e3
  • 6.64e3
  • 6.64e3
  • 9.25e3
  • 9.44e3
  • 9.44e3
  • 1.02e4
  • 1.05e4
77.77
  • 77.77
  • 77.77
  • 69.03
  • 68.40
  • 68.40
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.97e3
  • 6.97e3
  • 7.97e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 1.08e4
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
76.66
  • 76.66
  • 73.32
  • 69.99
  • 69.99
  • 69.43
  • 67.48
  • 63.87
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
73.97
  • 73.97
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
7.91e3
  • 7.91e3
  • 8.30e3
  • 9.13e3
73.52
  • 73.52
  • 72.21
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
8.65e3
  • 8.65e3
  • 8.65e3
  • 9.25e3
  • 1.29e4
71.04
  • 71.04
  • 71.04
  • 69.03
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.96e3
  • 8.96e3
  • 9.25e3
  • 9.61e3
  • 9.71e3
69.98
  • 69.98
  • 69.03
  • 67.83
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
69.98
  • 69.98
  • 69.43
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.44e3
  • 9.44e3
69.98
  • 69.98
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.19e3
  • 9.19e3
  • 9.19e3
  • 9.60e3
69.22
  • 69.22
  • 69.22
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.71e3
  • 9.71e3
  • 9.96e3
67.48
  • 67.48
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.07
  • 66.07
AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.12e4
65.37
  • 65.37
  • 64.27
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.66
  • 64.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.06e4
  • 1.06e4
64.59
  • 64.59
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.26e4
64.27
  • 64.27
  • 62.48
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.94
  • 63.94
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.10e4
  • 1.10e4
  • 1.20e4
63.14
  • 63.14
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.14e4
  • 1.14e4
  • 1.17e4
  • 1.33e4
61.98
  • 61.98
  • 60.99
  • 55.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
  • 1.26e4
  • 1.26e4
60.70
  • 60.70
  • 57.68
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.61
  • 59.61
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
  • 1.23e4
58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.13
  • 58.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.17
  • 57.17
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
CL:0000131gut endothelial cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001981blood vessel
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004363pharyngeal arch artery
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007844cartilage element
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001089myoseptum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.46
  • 45.46
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000036558.

Cross-references

EnsemblENSDARG00000036558 (col18a1)
ZFINZDB-GENE-030516-3 (col18a1)
EMBLBC163779, BX927363, CT030212
Uniprot/SPTREMBLB0S8G3, B0S8G3_DANRE, B0S8G4, B0S8G4_DANRE, B0S8G5, B0S8G5_DANRE

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